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The map label for this gene is cycF [H]

Identifier: 89054720

GI number: 89054720

Start: 2235398

End: 2235868

Strand: Reverse

Name: cycF [H]

Synonym: Jann_2229

Alternate gene names: 89054720

Gene position: 2235868-2235398 (Counterclockwise)

Preceding gene: 89054721

Following gene: 89054719

Centisome position: 51.78

GC content: 65.61

Gene sequence:

>471_bases
ATGTCCATCCTGAAAACCTCTCTCACCACCGGGGCCGTGGCCCTCACAGCCCTCGCCCTCACCGCCGGGGCCCAGGCGCA
GGATCGCAACCCTGCTGTCGACGCGCGGCAAGGTCACATGCAGATCATGGCGCTCAACCTTGGCATTCTGGGGAATATGG
CGCGGGGCAACACGGATTATGATGCCGAGGTCGCACAGGCCGCCGCCGACAACCTTGTGGCGATGGGCACCGTGAACCAG
AGGTTCTATTGGCCCCCGGGCACGGACAGTGAAAGCTATGAAGGCAGCCGCGCCCTGCCCGTCCTGTGGGAAGATCAGGC
GACGCTTTTTGAGATCGCCGGACGGTATACCCCCGCGGCTGAGGCGCTCGCGGCCTCTGCGGGTCAGGGTCTGGATGCGA
TGCGCGGCGCAGTGGGCCCCGTTGGTGCGGTCTGCGGCGATTGCCACGAGGCGTTTCAGGAAGAGCGGTAA

Upstream 100 bases:

>100_bases
CAGACCCGCCCACGCATCGGCGCACCGAAGCTTCATTTGACACGGTGTCGCCGCCCGCTAACGTGGAAGGACACGCCAGT
CGCCTGAAGGAGCCGCCAGC

Downstream 100 bases:

>100_bases
GGCCCCAAACGGGATCCAGAGTGAAGAGGATAATCCATGCCACCCGTGATCCGTTGGATTGTGTTCCTTGGGGTCGTTGG
GCTTGGGGCGGCGTGGTTTC

Product: cytochrome c, class II

Products: NA

Alternate protein names: Cytochrome c554; High-potential cytochrome c [H]

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSILKTSLTTGAVALTALALTAGAQAQDRNPAVDARQGHMQIMALNLGILGNMARGNTDYDAEVAQAAADNLVAMGTVNQ
RFYWPPGTDSESYEGSRALPVLWEDQATLFEIAGRYTPAAEALAASAGQGLDAMRGAVGPVGAVCGDCHEAFQEER

Sequences:

>Translated_156_residues
MSILKTSLTTGAVALTALALTAGAQAQDRNPAVDARQGHMQIMALNLGILGNMARGNTDYDAEVAQAAADNLVAMGTVNQ
RFYWPPGTDSESYEGSRALPVLWEDQATLFEIAGRYTPAAEALAASAGQGLDAMRGAVGPVGAVCGDCHEAFQEER
>Mature_155_residues
SILKTSLTTGAVALTALALTAGAQAQDRNPAVDARQGHMQIMALNLGILGNMARGNTDYDAEVAQAAADNLVAMGTVNQR
FYWPPGTDSESYEGSRALPVLWEDQATLFEIAGRYTPAAEALAASAGQGLDAMRGAVGPVGAVCGDCHEAFQEER

Specific function: Monoheme c-type cytochrome, that is particularly expressed when cells generate energy via aerobic respiration [H]

COG id: COG3909

COG function: function code C; Cytochrome c556

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010980
- InterPro:   IPR002321
- InterPro:   IPR012127
- InterPro:   IPR015984 [H]

Pfam domain/function: PF01322 Cytochrom_C_2 [H]

EC number: NA

Molecular weight: Translated: 16256; Mature: 16125

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS51009 CYTCII

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILKTSLTTGAVALTALALTAGAQAQDRNPAVDARQGHMQIMALNLGILGNMARGNTDY
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHCCCCCCCCCC
DAEVAQAAADNLVAMGTVNQRFYWPPGTDSESYEGSRALPVLWEDQATLFEIAGRYTPAA
HHHHHHHHHCCEEEEECCCCEEECCCCCCCCCCCCCCCCCEEECCCHHHHHHHCCCCCHH
EALAASAGQGLDAMRGAVGPVGAVCGDCHEAFQEER
HHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SILKTSLTTGAVALTALALTAGAQAQDRNPAVDARQGHMQIMALNLGILGNMARGNTDY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHCCCCCCCCCC
DAEVAQAAADNLVAMGTVNQRFYWPPGTDSESYEGSRALPVLWEDQATLFEIAGRYTPAA
HHHHHHHHHCCEEEEECCCCEEECCCCCCCCCCCCCCCCCEEECCCHHHHHHHCCCCCHH
EALAASAGQGLDAMRGAVGPVGAVCGDCHEAFQEER
HHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543472 [H]