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The map label for this gene is cycH [H]

Identifier: 89054673

GI number: 89054673

Start: 2188009

End: 2189229

Strand: Reverse

Name: cycH [H]

Synonym: Jann_2182

Alternate gene names: 89054673

Gene position: 2189229-2188009 (Counterclockwise)

Preceding gene: 89054681

Following gene: 89054672

Centisome position: 50.7

GC content: 67.81

Gene sequence:

>1221_bases
ATGGCGTTTTGGATTGCAGCGGGCTTCATTTGCGTGGTCGTCGCGGGCGTCGTGTTTCTGGCCGCCCGCCGCCCCGGAGA
CGTGCAGGCGCCCGCCGCCGCCTATGACCTACGGGTCTACCGCGACCAATTGGCCGAGCTGGACCGCGACGTGACCCGCG
GCACCCTGTCGGAGGAGGAGGCGACCCGCGCCCGCACCGAGGTCAGTCGCCGCATTCTGGACGCCGACCGCGCGTTGCAA
GAGGTGCAGCGCAGCGATGGCGCGTCCCGCCTTGGCACGGCTGTCGTGGGTTTGGGCCTTGTGGCCACGGTCGCGGGCGC
TGTTTTCGTCTACGGCCAGATCGGCGCGCCCGGCTATCCGGACCTGCCCATTGGCCAGCGCATCGCGATGATTGAAGAGG
CGCGCGACAACCGCCCCTCCCAGGACCTGGCTGAGGAGCAGGTGCCGGACCGCCCGGCCCCCAACGCCGACCCGGAGCGC
GCGGCGATGGTCGCGCAGCTGCGCACCGTGATGGAACAGCGCCCCGACGACACCGAAGGCCTGACCCTTCTGGCCGCGAA
TGAGGCGATGTTGGGTAACTTCCGCGCCGCCCACCGGGCGCAGACACGGCTGATTGGCCTTCTGGAAAACGACGTCACAG
GCCGCCATTACATCGATCTGGCCGAGATGATGATTTTCGCCGCCGGTGGCTATGTCTCGCCCGAGGCGGAAGAGGCCCTG
CGCATCGGTCTTCAGATGGAGCCGCGCGACGGCACAGGCCGCTATTATGCCGGTGAAATGTATGCCCAACAGGGACGCCC
GGACCTCGCGGTGCCGATCTGGACGGCTCTGTTGACCGAGTCGAACCCCGATGCGCCATGGGTGCAGCCGATCCGCCAGC
AATTGGGCGACGTGGCCTTCGCCGCGGGCGTGGAGGTTGACCCCTCGCTTCTCGCCGCGCCGCGTGGTCCCTCGATGGCC
GATATGGACGGGTTGGCCCCGGAAGATCAGCAGGCGATGATTGAGACAATGGTCAATGGCCTGGCCGACCGGCTGGCCAC
GGAAGGCGGACCGCCCCAGGACTGGGCGCAGCTGATCACCGCCTATGGCGTGTTGGGTCGCACGAACGCCGCGCAGATCG
TCCATGACGACGCCCAAACCGTGTTCGCCGACGTGCCCGAGGCGCTGGATATGATTGACGAGGCTTTCCGCGCGGCAATG
GCCCGGATTGGCGAGCAATGA

Upstream 100 bases:

>100_bases
GTCGCAGCGGTTGGCAGACTTGTGACGGGGTTGCGGGTTTCGCTTCGCCCCTCCGCGCCTTATGTCGGGGGCACGGGTAG
AGGGATAAGGACCGCACCAC

Downstream 100 bases:

>100_bases
TCTTTGAAACGCTCGATGAGTTCGCCGGGGCCGTGCCGCCCATGCGGGGACTCATCGGGCTTGATCTGGGGACGAAGACC
ATCGGTGTCGCGCTGTCCGA

Product: cytochrome c-type biogenesis protein CycH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MAFWIAAGFICVVVAGVVFLAARRPGDVQAPAAAYDLRVYRDQLAELDRDVTRGTLSEEEATRARTEVSRRILDADRALQ
EVQRSDGASRLGTAVVGLGLVATVAGAVFVYGQIGAPGYPDLPIGQRIAMIEEARDNRPSQDLAEEQVPDRPAPNADPER
AAMVAQLRTVMEQRPDDTEGLTLLAANEAMLGNFRAAHRAQTRLIGLLENDVTGRHYIDLAEMMIFAAGGYVSPEAEEAL
RIGLQMEPRDGTGRYYAGEMYAQQGRPDLAVPIWTALLTESNPDAPWVQPIRQQLGDVAFAAGVEVDPSLLAAPRGPSMA
DMDGLAPEDQQAMIETMVNGLADRLATEGGPPQDWAQLITAYGVLGRTNAAQIVHDDAQTVFADVPEALDMIDEAFRAAM
ARIGEQ

Sequences:

>Translated_406_residues
MAFWIAAGFICVVVAGVVFLAARRPGDVQAPAAAYDLRVYRDQLAELDRDVTRGTLSEEEATRARTEVSRRILDADRALQ
EVQRSDGASRLGTAVVGLGLVATVAGAVFVYGQIGAPGYPDLPIGQRIAMIEEARDNRPSQDLAEEQVPDRPAPNADPER
AAMVAQLRTVMEQRPDDTEGLTLLAANEAMLGNFRAAHRAQTRLIGLLENDVTGRHYIDLAEMMIFAAGGYVSPEAEEAL
RIGLQMEPRDGTGRYYAGEMYAQQGRPDLAVPIWTALLTESNPDAPWVQPIRQQLGDVAFAAGVEVDPSLLAAPRGPSMA
DMDGLAPEDQQAMIETMVNGLADRLATEGGPPQDWAQLITAYGVLGRTNAAQIVHDDAQTVFADVPEALDMIDEAFRAAM
ARIGEQ
>Mature_405_residues
AFWIAAGFICVVVAGVVFLAARRPGDVQAPAAAYDLRVYRDQLAELDRDVTRGTLSEEEATRARTEVSRRILDADRALQE
VQRSDGASRLGTAVVGLGLVATVAGAVFVYGQIGAPGYPDLPIGQRIAMIEEARDNRPSQDLAEEQVPDRPAPNADPERA
AMVAQLRTVMEQRPDDTEGLTLLAANEAMLGNFRAAHRAQTRLIGLLENDVTGRHYIDLAEMMIFAAGGYVSPEAEEALR
IGLQMEPRDGTGRYYAGEMYAQQGRPDLAVPIWTALLTESNPDAPWVQPIRQQLGDVAFAAGVEVDPSLLAAPRGPSMAD
MDGLAPEDQQAMIETMVNGLADRLATEGGPPQDWAQLITAYGVLGRTNAAQIVHDDAQTVFADVPEALDMIDEAFRAAMA
RIGEQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43762; Mature: 43631

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFWIAAGFICVVVAGVVFLAARRPGDVQAPAAAYDLRVYRDQLAELDRDVTRGTLSEEE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ATRARTEVSRRILDADRALQEVQRSDGASRLGTAVVGLGLVATVAGAVFVYGQIGAPGYP
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC
DLPIGQRIAMIEEARDNRPSQDLAEEQVPDRPAPNADPERAAMVAQLRTVMEQRPDDTEG
CCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
LTLLAANEAMLGNFRAAHRAQTRLIGLLENDVTGRHYIDLAEMMIFAAGGYVSPEAEEAL
EEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
RIGLQMEPRDGTGRYYAGEMYAQQGRPDLAVPIWTALLTESNPDAPWVQPIRQQLGDVAF
HHCCEECCCCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AAGVEVDPSLLAAPRGPSMADMDGLAPEDQQAMIETMVNGLADRLATEGGPPQDWAQLIT
HCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AYGVLGRTNAAQIVHDDAQTVFADVPEALDMIDEAFRAAMARIGEQ
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFWIAAGFICVVVAGVVFLAARRPGDVQAPAAAYDLRVYRDQLAELDRDVTRGTLSEEE
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ATRARTEVSRRILDADRALQEVQRSDGASRLGTAVVGLGLVATVAGAVFVYGQIGAPGYP
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC
DLPIGQRIAMIEEARDNRPSQDLAEEQVPDRPAPNADPERAAMVAQLRTVMEQRPDDTEG
CCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
LTLLAANEAMLGNFRAAHRAQTRLIGLLENDVTGRHYIDLAEMMIFAAGGYVSPEAEEAL
EEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
RIGLQMEPRDGTGRYYAGEMYAQQGRPDLAVPIWTALLTESNPDAPWVQPIRQQLGDVAF
HHCCEECCCCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AAGVEVDPSLLAAPRGPSMADMDGLAPEDQQAMIETMVNGLADRLATEGGPPQDWAQLIT
HCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AYGVLGRTNAAQIVHDDAQTVFADVPEALDMIDEAFRAAMARIGEQ
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]