Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89054650
Identifier: 89054650
GI number: 89054650
Start: 2167815
End: 2168234
Strand: Reverse
Name: 89054650
Synonym: Jann_2159
Alternate gene names: NA
Gene position: 2168234-2167815 (Counterclockwise)
Preceding gene: 89054651
Following gene: 89054649
Centisome position: 50.21
GC content: 66.9
Gene sequence:
>420_bases ATGAACCGGGCGCTGAGCACGGGGACGCGGCGACCAAGGCGCCTTCGGCGCGCGCCCCTCCTCGCTCTGCTCCTCGCAGC GGCCCCATTGGCGGCCCCCGTGGCAGTCATCGCAGAGCCATGGGCCTGCCGGATGACGGTGCAATGCGAGAATTACGATT GCTTTGCCATCGACGATCTTTACGAGGTCATCGCCGCCGATCACGCGGGCGATCTGTTTTTGACCTCGCCCGCAGGCGAC CGTCCGGTCACGCGGTTGCGGGACCAGGGCAGTCTGCCCGCCGCCTATGCCACCGCCGGGTCCCACGCCATCGGAGAGCT TTTGACCATCACCGCGGACGGCCAGGCGATCATGTCGATCCACGGCTCGGACGGACCGGCCCGGACGATCACCGTTTTCG GCACCTGCACACTCATTTAG
Upstream 100 bases:
>100_bases TCATCACCTTTGACAGCGTGGGCCGCGTGGCGGTCACCGGGCATCAACCGCAGGCCGGCACGCGGGTGGTCACGGGGATT GGCTCTTGCGAGATCCCGGA
Downstream 100 bases:
>100_bases GCCCTTCTTTATCTGGCCATTTCCGTGCCCGCGCGCTACCAGAGACCAAAGCAAGCCTCACCATAAGGGGCTGCGACCAA CCGGGAGACGACGCGTGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 139; Mature: 139
Protein sequence:
>139_residues MNRALSTGTRRPRRLRRAPLLALLLAAAPLAAPVAVIAEPWACRMTVQCENYDCFAIDDLYEVIAADHAGDLFLTSPAGD RPVTRLRDQGSLPAAYATAGSHAIGELLTITADGQAIMSIHGSDGPARTITVFGTCTLI
Sequences:
>Translated_139_residues MNRALSTGTRRPRRLRRAPLLALLLAAAPLAAPVAVIAEPWACRMTVQCENYDCFAIDDLYEVIAADHAGDLFLTSPAGD RPVTRLRDQGSLPAAYATAGSHAIGELLTITADGQAIMSIHGSDGPARTITVFGTCTLI >Mature_139_residues MNRALSTGTRRPRRLRRAPLLALLLAAAPLAAPVAVIAEPWACRMTVQCENYDCFAIDDLYEVIAADHAGDLFLTSPAGD RPVTRLRDQGSLPAAYATAGSHAIGELLTITADGQAIMSIHGSDGPARTITVFGTCTLI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14702; Mature: 14702
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRALSTGTRRPRRLRRAPLLALLLAAAPLAAPVAVIAEPWACRMTVQCENYDCFAIDDL CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCHHHCCCCCEEEEEEEECCCCEEEHHHH YEVIAADHAGDLFLTSPAGDRPVTRLRDQGSLPAAYATAGSHAIGELLTITADGQAIMSI HHHHHCCCCCCEEEECCCCCCCHHHHCCCCCCCEEECCCCCCCCCEEEEEEECCEEEEEE HGSDGPARTITVFGTCTLI ECCCCCCEEEEEEEEEEEC >Mature Secondary Structure MNRALSTGTRRPRRLRRAPLLALLLAAAPLAAPVAVIAEPWACRMTVQCENYDCFAIDDL CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCHHHCCCCCEEEEEEEECCCCEEEHHHH YEVIAADHAGDLFLTSPAGDRPVTRLRDQGSLPAAYATAGSHAIGELLTITADGQAIMSI HHHHHCCCCCCEEEECCCCCCCHHHHCCCCCCCEEECCCCCCCCCEEEEEEECCEEEEEE HGSDGPARTITVFGTCTLI ECCCCCCEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA