Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89054651
Identifier: 89054651
GI number: 89054651
Start: 2168231
End: 2168635
Strand: Reverse
Name: 89054651
Synonym: Jann_2160
Alternate gene names: NA
Gene position: 2168635-2168231 (Counterclockwise)
Preceding gene: 89054652
Following gene: 89054650
Centisome position: 50.22
GC content: 64.69
Gene sequence:
>405_bases ATGATGCGGCTTGCCATGATATCCCTGATCTGCGCCTTGCCCACCGGCGTTCAGGCGCAGGAGGCTCCGGTCAACTGGAC CTGTGTGCTGGACGTCCTGTGCCCAGATGTGGGCGCGTGTCGGGATTGGGATCAGACGATCACGATTGCGGAGGGCGATG ATGGGTGGAGCGTGGTCTGGAACGCCGACCTGCCCTCGGCCTATGAGCTGATCGCCGATTATCGCCCCCCTGCGGACGCG GTGGAGCAGGTGCGCGTGCGCACGCTTCTGTTCCGCAACGAGCGCACGCAATCGTCGCAAATCATCACCTTTGACAGCGT GGGCCGCGTGGCGGTCACCGGGCATCAACCGCAGGCCGGCACGCGGGTGGTCACGGGGATTGGCTCTTGCGAGATCCCGG AATGA
Upstream 100 bases:
>100_bases TGCGAGCCGGGCGCATGAGGGGGCGGGCCGGACGCGTGTCGAGATCAGGACCCGGTGCGATAGAGCGCAATGGGCCCGCT TTTAGTGAAGGAGATCGCCC
Downstream 100 bases:
>100_bases ACCGGGCGCTGAGCACGGGGACGCGGCGACCAAGGCGCCTTCGGCGCGCGCCCCTCCTCGCTCTGCTCCTCGCAGCGGCC CCATTGGCGGCCCCCGTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MMRLAMISLICALPTGVQAQEAPVNWTCVLDVLCPDVGACRDWDQTITIAEGDDGWSVVWNADLPSAYELIADYRPPADA VEQVRVRTLLFRNERTQSSQIITFDSVGRVAVTGHQPQAGTRVVTGIGSCEIPE
Sequences:
>Translated_134_residues MMRLAMISLICALPTGVQAQEAPVNWTCVLDVLCPDVGACRDWDQTITIAEGDDGWSVVWNADLPSAYELIADYRPPADA VEQVRVRTLLFRNERTQSSQIITFDSVGRVAVTGHQPQAGTRVVTGIGSCEIPE >Mature_134_residues MMRLAMISLICALPTGVQAQEAPVNWTCVLDVLCPDVGACRDWDQTITIAEGDDGWSVVWNADLPSAYELIADYRPPADA VEQVRVRTLLFRNERTQSSQIITFDSVGRVAVTGHQPQAGTRVVTGIGSCEIPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14617; Mature: 14617
Theoretical pI: Translated: 4.16; Mature: 4.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRLAMISLICALPTGVQAQEAPVNWTCVLDVLCPDVGACRDWDQTITIAEGDDGWSVVW CHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEE NADLPSAYELIADYRPPADAVEQVRVRTLLFRNERTQSSQIITFDSVGRVAVTGHQPQAG ECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCC TRVVTGIGSCEIPE CEEEEECCCCCCCC >Mature Secondary Structure MMRLAMISLICALPTGVQAQEAPVNWTCVLDVLCPDVGACRDWDQTITIAEGDDGWSVVW CHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEE NADLPSAYELIADYRPPADAVEQVRVRTLLFRNERTQSSQIITFDSVGRVAVTGHQPQAG ECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCC TRVVTGIGSCEIPE CEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA