| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is oppD [H]
Identifier: 89054534
GI number: 89054534
Start: 2047456
End: 2048286
Strand: Reverse
Name: oppD [H]
Synonym: Jann_2043
Alternate gene names: 89054534
Gene position: 2048286-2047456 (Counterclockwise)
Preceding gene: 89054535
Following gene: 89054533
Centisome position: 47.44
GC content: 64.14
Gene sequence:
>831_bases ATGAGCCTTCTGTCGGTCGACAACCTCTCGGTCAGCTTCCCCACGCCAAAGGGCCGCATGAATGTGGTCGACGGCGTGTC ATTCACCTTGGGACAGGAACGTCTGGGGATTGTCGGCGAAAGTGGGTCCGGCAAAAGCATGACCGGTCGCGCGATCCTGC GGCTGATCCGCCCGCCGGGGCAGGTCGCGGGGCGGATGACGTTTGAAGGGCAGGATCTGGGCGCCCTGTCCGAGCGTCAG ATGCGGCAGATGCGGGGCGCCAAGATCTCCATGATCATGCAGGACCCGCGCTATTCCCTGAACCCGGTGATGACTGTCGG TGCACAGATCGCCGAGGCGCTGCGCACCCACGAACGCCTGCCCCGCCAGGACCTGAAGGCCCGCGTGCACGACATGCTGG AGGCCGTGCGCATAAACGACCCCGACCGCGTGGCGCGCATGTATGCCCATGAGCTGTCGGGCGGCATGGGCCAGCGCGTG ATGATTGCGATGATGCTGATCCCGCGTCCGCGCCTGCTGATCGCGGATGAACCGACGAGCGCGCTGGATGTCAGCGTACA GGGCGATGTTCTGGCGCTGATCAATGATCTGGTGGGCGGCGATACCATCAACAGCGACGGCATGGGACTGATCCTGATCA GCCATGATCTGCCGCTGGTGGCGCGCTATTGCGACCGGATTCTGGTGATGAATTCGGGCCGTGTGGTAGAGACCTGCGCG GCGAAGGACCTGCATAAGGCCACGCATCCCTACACCCGTGGCCTGCTGGCCGCCGTACCCAAGATGCATGAGACGCGCGC CGAATTGCCGGTGATGGAGCGCACGACATGA
Upstream 100 bases:
>100_bases CCACCTTCCCCGGTTTTGCCATCATCCTCGTGTCGCTGGGGTTCTGTTTTCTCGGCGACGGGGTGCGCGATGTGCTGGAC CCGAAATCGGAGCGCAAGGG
Downstream 100 bases:
>100_bases CGGTCCCCGGCCCGGCCATTTCGATGGCAGATCTCGACATCGCCTACGACGGTCTGCGAGTCGTGCAAGGCGTCACGATT GACGTCGCACGCGGAGAGAG
Product: ABC transporter-like protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MSLLSVDNLSVSFPTPKGRMNVVDGVSFTLGQERLGIVGESGSGKSMTGRAILRLIRPPGQVAGRMTFEGQDLGALSERQ MRQMRGAKISMIMQDPRYSLNPVMTVGAQIAEALRTHERLPRQDLKARVHDMLEAVRINDPDRVARMYAHELSGGMGQRV MIAMMLIPRPRLLIADEPTSALDVSVQGDVLALINDLVGGDTINSDGMGLILISHDLPLVARYCDRILVMNSGRVVETCA AKDLHKATHPYTRGLLAAVPKMHETRAELPVMERTT
Sequences:
>Translated_276_residues MSLLSVDNLSVSFPTPKGRMNVVDGVSFTLGQERLGIVGESGSGKSMTGRAILRLIRPPGQVAGRMTFEGQDLGALSERQ MRQMRGAKISMIMQDPRYSLNPVMTVGAQIAEALRTHERLPRQDLKARVHDMLEAVRINDPDRVARMYAHELSGGMGQRV MIAMMLIPRPRLLIADEPTSALDVSVQGDVLALINDLVGGDTINSDGMGLILISHDLPLVARYCDRILVMNSGRVVETCA AKDLHKATHPYTRGLLAAVPKMHETRAELPVMERTT >Mature_275_residues SLLSVDNLSVSFPTPKGRMNVVDGVSFTLGQERLGIVGESGSGKSMTGRAILRLIRPPGQVAGRMTFEGQDLGALSERQM RQMRGAKISMIMQDPRYSLNPVMTVGAQIAEALRTHERLPRQDLKARVHDMLEAVRINDPDRVARMYAHELSGGMGQRVM IAMMLIPRPRLLIADEPTSALDVSVQGDVLALINDLVGGDTINSDGMGLILISHDLPLVARYCDRILVMNSGRVVETCAA KDLHKATHPYTRGLLAAVPKMHETRAELPVMERTT
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42741659, Length=255, Percent_Identity=27.0588235294118, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4505771, Length=243, Percent_Identity=28.3950617283951, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI9961252, Length=243, Percent_Identity=28.3950617283951, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI9961250, Length=257, Percent_Identity=25.6809338521401, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI156105685, Length=250, Percent_Identity=28.4, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI255708477, Length=247, Percent_Identity=25.9109311740891, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI148612844, Length=244, Percent_Identity=26.2295081967213, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9955963, Length=233, Percent_Identity=27.8969957081545, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI48994883, Length=263, Percent_Identity=45.6273764258555, Blast_Score=225, Evalue=2e-60, Organism=Escherichia coli, GI1789963, Length=272, Percent_Identity=46.6911764705882, Blast_Score=225, Evalue=2e-60, Organism=Escherichia coli, GI145693107, Length=270, Percent_Identity=44.8148148148148, Blast_Score=211, Evalue=6e-56, Organism=Escherichia coli, GI1787759, Length=278, Percent_Identity=39.9280575539568, Blast_Score=197, Evalue=8e-52, Organism=Escherichia coli, GI1788506, Length=263, Percent_Identity=43.3460076045627, Blast_Score=190, Evalue=1e-49, Organism=Escherichia coli, GI1787500, Length=270, Percent_Identity=41.8518518518518, Blast_Score=174, Evalue=4e-45, Organism=Escherichia coli, GI1787548, Length=270, Percent_Identity=38.1481481481481, Blast_Score=159, Evalue=2e-40, Organism=Escherichia coli, GI1789962, Length=272, Percent_Identity=37.1323529411765, Blast_Score=144, Evalue=5e-36, Organism=Escherichia coli, GI1789890, Length=241, Percent_Identity=37.344398340249, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1787758, Length=283, Percent_Identity=32.1554770318021, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI48994997, Length=261, Percent_Identity=35.632183908046, Blast_Score=117, Evalue=9e-28, Organism=Escherichia coli, GI1789891, Length=244, Percent_Identity=34.4262295081967, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1786398, Length=252, Percent_Identity=30.952380952381, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787547, Length=268, Percent_Identity=32.8358208955224, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87081791, Length=252, Percent_Identity=32.5396825396825, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI87081834, Length=235, Percent_Identity=33.6170212765957, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1789991, Length=243, Percent_Identity=30.8641975308642, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1789672, Length=262, Percent_Identity=28.2442748091603, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1788225, Length=260, Percent_Identity=30.3846153846154, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1789032, Length=224, Percent_Identity=33.0357142857143, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87081709, Length=230, Percent_Identity=29.5652173913043, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790162, Length=263, Percent_Identity=27.3764258555133, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1790739, Length=239, Percent_Identity=30.5439330543933, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1789586, Length=259, Percent_Identity=30.8880308880309, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788761, Length=260, Percent_Identity=29.2307692307692, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787029, Length=244, Percent_Identity=28.2786885245902, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=28.5123966942149, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1787105, Length=235, Percent_Identity=31.4893617021277, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789873, Length=228, Percent_Identity=28.9473684210526, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=29.0748898678414, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1786345, Length=235, Percent_Identity=29.7872340425532, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787712, Length=257, Percent_Identity=28.0155642023346, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1786319, Length=209, Percent_Identity=29.1866028708134, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786803, Length=243, Percent_Identity=26.7489711934156, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788450, Length=204, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1790190, Length=220, Percent_Identity=30.9090909090909, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI48994943, Length=234, Percent_Identity=29.9145299145299, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787792, Length=224, Percent_Identity=29.0178571428571, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786703, Length=241, Percent_Identity=31.5352697095436, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1788165, Length=231, Percent_Identity=29.4372294372294, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1788644, Length=173, Percent_Identity=28.9017341040462, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1788472, Length=116, Percent_Identity=32.7586206896552, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI48995001, Length=85, Percent_Identity=36.4705882352941, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790525, Length=239, Percent_Identity=24.6861924686192, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786872, Length=200, Percent_Identity=26.5, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI25146777, Length=263, Percent_Identity=29.277566539924, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17567265, Length=236, Percent_Identity=30.0847457627119, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193209708, Length=249, Percent_Identity=30.5220883534137, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193202349, Length=242, Percent_Identity=26.4462809917355, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI212646699, Length=246, Percent_Identity=28.4552845528455, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17569143, Length=269, Percent_Identity=28.6245353159851, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534520, Length=236, Percent_Identity=26.6949152542373, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17558664, Length=216, Percent_Identity=29.6296296296296, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193208177, Length=238, Percent_Identity=28.1512605042017, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71992290, Length=248, Percent_Identity=29.8387096774194, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71992285, Length=245, Percent_Identity=27.3469387755102, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17567269, Length=242, Percent_Identity=28.099173553719, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17569145, Length=241, Percent_Identity=28.6307053941909, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI115533592, Length=267, Percent_Identity=25.8426966292135, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115535101, Length=242, Percent_Identity=27.6859504132231, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17541710, Length=243, Percent_Identity=27.5720164609054, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17543740, Length=233, Percent_Identity=28.3261802575107, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17565938, Length=247, Percent_Identity=27.5303643724696, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=247, Percent_Identity=27.9352226720648, Blast_Score=83, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6322980, Length=290, Percent_Identity=27.2413793103448, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322640, Length=246, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6323959, Length=218, Percent_Identity=27.5229357798165, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI24641565, Length=272, Percent_Identity=30.1470588235294, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI85726357, Length=256, Percent_Identity=28.125, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI23397593, Length=259, Percent_Identity=29.3436293436293, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI281363262, Length=240, Percent_Identity=28.75, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24653245, Length=240, Percent_Identity=28.75, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24659289, Length=220, Percent_Identity=27.7272727272727, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136662, Length=217, Percent_Identity=27.1889400921659, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30216; Mature: 30085
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 6.9 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 6.5 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLSVDNLSVSFPTPKGRMNVVDGVSFTLGQERLGIVGESGSGKSMTGRAILRLIRPPG CCCEEECCCEEECCCCCCCCEEECCCEEEECCHHCEEEECCCCCCCHHHHHHHHHHCCCH QVAGRMTFEGQDLGALSERQMRQMRGAKISMIMQDPRYSLNPVMTVGAQIAEALRTHERL HHHCEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC PRQDLKARVHDMLEAVRINDPDRVARMYAHELSGGMGQRVMIAMMLIPRPRLLIADEPTS CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCC ALDVSVQGDVLALINDLVGGDTINSDGMGLILISHDLPLVARYCDRILVMNSGRVVETCA EEEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHCEEEEECCCCEEHHHH AKDLHKATHPYTRGLLAAVPKMHETRAELPVMERTT HHHHHHHCCHHHHHHHHHHCHHHHHHHCCCCCCCCC >Mature Secondary Structure SLLSVDNLSVSFPTPKGRMNVVDGVSFTLGQERLGIVGESGSGKSMTGRAILRLIRPPG CCEEECCCEEECCCCCCCCEEECCCEEEECCHHCEEEECCCCCCCHHHHHHHHHHCCCH QVAGRMTFEGQDLGALSERQMRQMRGAKISMIMQDPRYSLNPVMTVGAQIAEALRTHERL HHHCEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC PRQDLKARVHDMLEAVRINDPDRVARMYAHELSGGMGQRVMIAMMLIPRPRLLIADEPTS CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCC ALDVSVQGDVLALINDLVGGDTINSDGMGLILISHDLPLVARYCDRILVMNSGRVVETCA EEEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHCEEEEECCCCEEHHHH AKDLHKATHPYTRGLLAAVPKMHETRAELPVMERTT HHHHHHHCCHHHHHHHHHHCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]