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The map label for this gene is ddpC [H]

Identifier: 89054535

GI number: 89054535

Start: 2048283

End: 2049179

Strand: Reverse

Name: ddpC [H]

Synonym: Jann_2044

Alternate gene names: 89054535

Gene position: 2049179-2048283 (Counterclockwise)

Preceding gene: 89054536

Following gene: 89054534

Centisome position: 47.46

GC content: 65.11

Gene sequence:

>897_bases
ATGCGCGACTGGCTTCTGGACGACAGCCCGTCGTCGCGCACCCAAGCCGCATCGGGGCGGGCGTATCGCATCACGCTGGA
CCTGCTGCGCAACCCCCTGACCGTGGCGGGTGCGCTGATCATCGCCGCATTGATCCTGACGGCGATCTTCGCGGATGCCA
TCGCGCCGGGCGGACCGGGCGGCCAGTTCCTGGAGCGCCGCCTGCAACCGCCATCGTCTGAATTCTGGTTCGGCACCGAT
CAATTGGGCCGCGATATCTTTTCCCGTGTGGTCCACGGCGCACAGATCACGTTGCAGATCGTGGCTTTGGTGGCCGTCAT
ATCCGCCCCCCTCGGCCTGTTGATCGGGGCGATCTCCGGCTACTTTGGCGGCTGGATCGACCGGACGCTGATGGGGGTGA
CGGATGTGTTCCTGTCGATGCCGAAGCTGGTCCTGGCGCTGGCCTTCGCCGCCGCTCTTGGACCGGGGATCGACAATGCG
ATCATCGCCATTGCCATCACCACATGGCCCGCCTATGCCCGCATCGCACGGGCCGAAACGCTGACGCTGCGCAGGTCCGA
ATTCGTCGCTGCCGCGCGGCTCTTGGGGGCGTCGCATACGCGCGTCATCACCCGCCACATCCTGCCACTCTGCACATCGT
CGATGATCATCCGCGTCACGCTGGACATGGCGGGGATCATCCTGACGGCCGCCGGGCTTGGCTTTCTGGGCCTTGGCGCA
CAACCGCCCGAACCGGAATGGGGCGCGATGATCTCGGGCGGGCGGTCATTCATCTATGACCAATGGTGGGTCTCCACCTT
CCCCGGTTTTGCCATCATCCTCGTGTCGCTGGGGTTCTGTTTTCTCGGCGACGGGGTGCGCGATGTGCTGGACCCGAAAT
CGGAGCGCAAGGGATGA

Upstream 100 bases:

>100_bases
GCGACGCTGGTCATTGGCGCGGTGTTCATCCTGATCAACAAAGTGTCTGACCTGCTTTACCGCATTCTCGACCCCCGCTC
ACGCGATGGGAGCCGCTGAC

Downstream 100 bases:

>100_bases
GCCTTCTGTCGGTCGACAACCTCTCGGTCAGCTTCCCCACGCCAAAGGGCCGCATGAATGTGGTCGACGGCGTGTCATTC
ACCTTGGGACAGGAACGTCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MRDWLLDDSPSSRTQAASGRAYRITLDLLRNPLTVAGALIIAALILTAIFADAIAPGGPGGQFLERRLQPPSSEFWFGTD
QLGRDIFSRVVHGAQITLQIVALVAVISAPLGLLIGAISGYFGGWIDRTLMGVTDVFLSMPKLVLALAFAAALGPGIDNA
IIAIAITTWPAYARIARAETLTLRRSEFVAAARLLGASHTRVITRHILPLCTSSMIIRVTLDMAGIILTAAGLGFLGLGA
QPPEPEWGAMISGGRSFIYDQWWVSTFPGFAIILVSLGFCFLGDGVRDVLDPKSERKG

Sequences:

>Translated_298_residues
MRDWLLDDSPSSRTQAASGRAYRITLDLLRNPLTVAGALIIAALILTAIFADAIAPGGPGGQFLERRLQPPSSEFWFGTD
QLGRDIFSRVVHGAQITLQIVALVAVISAPLGLLIGAISGYFGGWIDRTLMGVTDVFLSMPKLVLALAFAAALGPGIDNA
IIAIAITTWPAYARIARAETLTLRRSEFVAAARLLGASHTRVITRHILPLCTSSMIIRVTLDMAGIILTAAGLGFLGLGA
QPPEPEWGAMISGGRSFIYDQWWVSTFPGFAIILVSLGFCFLGDGVRDVLDPKSERKG
>Mature_298_residues
MRDWLLDDSPSSRTQAASGRAYRITLDLLRNPLTVAGALIIAALILTAIFADAIAPGGPGGQFLERRLQPPSSEFWFGTD
QLGRDIFSRVVHGAQITLQIVALVAVISAPLGLLIGAISGYFGGWIDRTLMGVTDVFLSMPKLVLALAFAAALGPGIDNA
IIAIAITTWPAYARIARAETLTLRRSEFVAAARLLGASHTRVITRHILPLCTSSMIIRVTLDMAGIILTAAGLGFLGLGA
QPPEPEWGAMISGGRSFIYDQWWVSTFPGFAIILVSLGFCFLGDGVRDVLDPKSERKG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=267, Percent_Identity=46.8164794007491, Blast_Score=244, Evalue=5e-66,
Organism=Escherichia coli, GI1787054, Length=265, Percent_Identity=46.7924528301887, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1789964, Length=258, Percent_Identity=43.4108527131783, Blast_Score=190, Evalue=9e-50,
Organism=Escherichia coli, GI1789889, Length=238, Percent_Identity=39.9159663865546, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1787498, Length=222, Percent_Identity=35.5855855855856, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787549, Length=252, Percent_Identity=36.1111111111111, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=29.646017699115, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31801; Mature: 31801

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDWLLDDSPSSRTQAASGRAYRITLDLLRNPLTVAGALIIAALILTAIFADAIAPGGPG
CCCCCCCCCCCCCHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GQFLERRLQPPSSEFWFGTDQLGRDIFSRVVHGAQITLQIVALVAVISAPLGLLIGAISG
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFGGWIDRTLMGVTDVFLSMPKLVLALAFAAALGPGIDNAIIAIAITTWPAYARIARAET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHH
LTLRRSEFVAAARLLGASHTRVITRHILPLCTSSMIIRVTLDMAGIILTAAGLGFLGLGA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHHHHHHCCCC
QPPEPEWGAMISGGRSFIYDQWWVSTFPGFAIILVSLGFCFLGDGVRDVLDPKSERKG
CCCCCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MRDWLLDDSPSSRTQAASGRAYRITLDLLRNPLTVAGALIIAALILTAIFADAIAPGGPG
CCCCCCCCCCCCCHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GQFLERRLQPPSSEFWFGTDQLGRDIFSRVVHGAQITLQIVALVAVISAPLGLLIGAISG
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFGGWIDRTLMGVTDVFLSMPKLVLALAFAAALGPGIDNAIIAIAITTWPAYARIARAET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHH
LTLRRSEFVAAARLLGASHTRVITRHILPLCTSSMIIRVTLDMAGIILTAAGLGFLGLGA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHHHHHHCCCC
QPPEPEWGAMISGGRSFIYDQWWVSTFPGFAIILVSLGFCFLGDGVRDVLDPKSERKG
CCCCCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]