Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
---|---|
Accession | NC_007802 |
Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89054492
Identifier: 89054492
GI number: 89054492
Start: 2002894
End: 2003718
Strand: Direct
Name: 89054492
Synonym: Jann_2001
Alternate gene names: NA
Gene position: 2002894-2003718 (Clockwise)
Preceding gene: 89054491
Following gene: 89054493
Centisome position: 46.39
GC content: 52.48
Gene sequence:
>825_bases ATGGAGGCCTGCTTTCCCTATTGGAGCTTCACCAAAACCGTAATCGCAATCTGTGCCTTGAAGTTGGTTGAAAGCGGGAA ACTCGATTTGGACGCCAAGCTAAACGACGAACCGCATACGCTTCGCCAGCTTCTTAACCACACCTCTGGACTTCCAGACT ATGGCCAGTTCTCTGAGTACCACTCAGCCGTTGCGGCTAAAGAACTGCCTTGGACTCGTAGCAAACTCCTAGATGTAGCG CTTGCTAAAGGGATGTTGTTTGAACCGACACAAGGCTGGTCGTACTCCAACATCGGCTACATGTTCGTGGTCGAGCTAAT TGAAACAACGATGGAAAAACCGCTTCGTAAAGTCATCGCCGAAATGGTATGCAAGCCGTTGAGTCTGCTTAGTGTTGAGC TTGCAGAGACACGCGAACAGTTTGATCGTGTACACTGGGAGGCCGCGACGGACTACGATCCAAAGTGGGTTTATCACGGG TGTCTGATCGGGAATGCACCAGACGCGGCACGTTTGCTGCACGCACTTATGGTAGATCATCTGTTGCAGCCAGAGACCAT GCGTCAGATGCTCGATGCAAGATACCTTGGCGGTGCTATTCCAGACCGTCCATGGACAGAATGCGGTTATGCACTTGGCC TAATGTCTGGGGCGGTGAAAGGTGCCGGTAAGGCGGTGGGGCACTCTGGTAGTGGACCGTTCAGTGTGAATGCAGTCTAT CATTTCCCAGACGTCAGTGACCCGATCACCGTGGCCTCGTTCACAGACGGGACCGATGAGGCTGTTGCTGAATTTGAAGC AGAGAGGGTGGCTGAAGGTCAGTAA
Upstream 100 bases:
>100_bases TGACGCGACCAAGGCAATGACAGACACTTGTAAAATGACCGTTCGAACAGTTCATTCTTATTGGATCACAGCCTCTGGCC GCGAAGGTCTCTCGGGTTCG
Downstream 100 bases:
>100_bases TGGTTTTGTCCCGCACTGCGATCATTGCCACGAAAAAATGCTGCGCAGTGCATGAACATCGGCTTTCAGGAGGCGCATTG GTTAACCGTGGGGGCGGCTG
Product: beta-lactamase
Products: NA
Alternate protein names: Serine-Type D-Ala-D-Ala Carboxypeptidase; D-Alanyl-D-Alanine Carboxypeptidase; Alkaline D-Peptidase; DD-Peptidase; Beta-Lactamase Family Protein; Beta-Lactamase Class C; Betalactamase; D-Stereospecific Endopeptidase; Dipeptidil Carboxypeptidase
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MEACFPYWSFTKTVIAICALKLVESGKLDLDAKLNDEPHTLRQLLNHTSGLPDYGQFSEYHSAVAAKELPWTRSKLLDVA LAKGMLFEPTQGWSYSNIGYMFVVELIETTMEKPLRKVIAEMVCKPLSLLSVELAETREQFDRVHWEAATDYDPKWVYHG CLIGNAPDAARLLHALMVDHLLQPETMRQMLDARYLGGAIPDRPWTECGYALGLMSGAVKGAGKAVGHSGSGPFSVNAVY HFPDVSDPITVASFTDGTDEAVAEFEAERVAEGQ
Sequences:
>Translated_274_residues MEACFPYWSFTKTVIAICALKLVESGKLDLDAKLNDEPHTLRQLLNHTSGLPDYGQFSEYHSAVAAKELPWTRSKLLDVA LAKGMLFEPTQGWSYSNIGYMFVVELIETTMEKPLRKVIAEMVCKPLSLLSVELAETREQFDRVHWEAATDYDPKWVYHG CLIGNAPDAARLLHALMVDHLLQPETMRQMLDARYLGGAIPDRPWTECGYALGLMSGAVKGAGKAVGHSGSGPFSVNAVY HFPDVSDPITVASFTDGTDEAVAEFEAERVAEGQ >Mature_274_residues MEACFPYWSFTKTVIAICALKLVESGKLDLDAKLNDEPHTLRQLLNHTSGLPDYGQFSEYHSAVAAKELPWTRSKLLDVA LAKGMLFEPTQGWSYSNIGYMFVVELIETTMEKPLRKVIAEMVCKPLSLLSVELAETREQFDRVHWEAATDYDPKWVYHG CLIGNAPDAARLLHALMVDHLLQPETMRQMLDARYLGGAIPDRPWTECGYALGLMSGAVKGAGKAVGHSGSGPFSVNAVY HFPDVSDPITVASFTDGTDEAVAEFEAERVAEGQ
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30270; Mature: 30270
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEACFPYWSFTKTVIAICALKLVESGKLDLDAKLNDEPHTLRQLLNHTSGLPDYGQFSEY CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH HSAVAAKELPWTRSKLLDVALAKGMLFEPTQGWSYSNIGYMFVVELIETTMEKPLRKVIA HHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH EMVCKPLSLLSVELAETREQFDRVHWEAATDYDPKWVYHGCLIGNAPDAARLLHALMVDH HHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH LLQPETMRQMLDARYLGGAIPDRPWTECGYALGLMSGAVKGAGKAVGHSGSGPFSVNAVY HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEEE HFPDVSDPITVASFTDGTDEAVAEFEAERVAEGQ ECCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MEACFPYWSFTKTVIAICALKLVESGKLDLDAKLNDEPHTLRQLLNHTSGLPDYGQFSEY CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH HSAVAAKELPWTRSKLLDVALAKGMLFEPTQGWSYSNIGYMFVVELIETTMEKPLRKVIA HHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH EMVCKPLSLLSVELAETREQFDRVHWEAATDYDPKWVYHGCLIGNAPDAARLLHALMVDH HHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH LLQPETMRQMLDARYLGGAIPDRPWTECGYALGLMSGAVKGAGKAVGHSGSGPFSVNAVY HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEEE HFPDVSDPITVASFTDGTDEAVAEFEAERVAEGQ ECCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA