Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
---|---|
Accession | NC_007802 |
Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89054469
Identifier: 89054469
GI number: 89054469
Start: 1974100
End: 1975059
Strand: Reverse
Name: 89054469
Synonym: Jann_1978
Alternate gene names: NA
Gene position: 1975059-1974100 (Counterclockwise)
Preceding gene: 89054470
Following gene: 89054468
Centisome position: 45.74
GC content: 65.1
Gene sequence:
>960_bases ATGACATTCCGGGAGACCCTCATGGCCCTTCTCAACTTCCGCAAGCAGGCGCCCGCGCCCACCGCCACCAGCGCCGATAT GGAAGCCCTCCTGCAGGGTTATTCGATCGAGGTCATGCCCCGCACCGCCGAAAAGGTGGACGACTTCCGCCACTACCTGC CCGCAGGCACGCGGGTCTACATCGCCCATATCGACGGCACGCCCATTGAGGATATGGTGGCGACCGCCGCGCGTATCCGG GCCGAGGGCTATGAGCCAATGCCCCATTTCGCCGCCCGCTCCATCCCTGACGCCGCAACGCTGGCCGATTGGATCGCCCG TTATCAGGGCGAGGCCGACGTGCGCCAAGGCCTCATCCTGGCCGGTGGCATTGCCGAGCCGCGCGGGGACTTCCACGCCT CCATGCAACTGCTGGAAACCGGCCTCTTCGACAAGGCAGGCTTCACCCGCCTTCACGTCGCGGGCCACCCCGAGGGCAAC CGCGACATCGATACCACGGGCGATGCGGGCGTGATGGAGGCGCTGCGCTGGAAGCAAGCGTTCCGCGACCGCACCGATGC CGACATGGCCATGGCCACCCAATTCGCCTTTGAGGCCGGTCCCGTGATTGCCTGGGCCGAGCGGCTCCAGGCCGAGGGCA TCACCCTGCCCATCCACCTTGGGATCGCGGGGCCGGGCAAGCTGCAAACGCTGATCAAATTCGCCATCGCCTGCGGCGTC GGCAACTCCCTGCAAGTGCTTCAAAAACGTGCCAAGGACGTGACCAAACTGCTGCTGCCGTTTGAGCCCAATGAGATCAT GGCGGACCTGGCGACGTATAAGGCTGCCCACCCCGAAAGCCTGATTGAGAGCATCCACTTCTTCCCCCTCGGCGGGATCA AAACGAACGCCAAATGGGCGGTCACAAACGGTGGTGCTGCGACCGAGCCGGTGAATGGGCGCGAGGCGGCGTTTGCCTGA
Upstream 100 bases:
>100_bases CGCAGCGGAGGCCGCCAAACTTGACGCCGCATATGACACTACTCGCCTCAAGACCCTGATCGACGCGGAGGGGCATGACC CGTCCAAGCCTGCCACCTGA
Downstream 100 bases:
>100_bases GCTGCGACCCCCTGCTCAAGCTTGAGCAAGGGGTTAAGTATCTGAGTTAGAACGAAAACGCATCTGCGCTTCCGTTTTTT TATGGCGGTTACGGGCAAAG
Product: metfprotein-like
Products: NA
Alternate protein names: 5 10-Methylenetetrahydrofolate Reductase; Methylenetetrahydrofolate Reductase Family Protein; Metfprotein-Like; MetF-Like Protein; Metfprotein -Like Protein
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MTFRETLMALLNFRKQAPAPTATSADMEALLQGYSIEVMPRTAEKVDDFRHYLPAGTRVYIAHIDGTPIEDMVATAARIR AEGYEPMPHFAARSIPDAATLADWIARYQGEADVRQGLILAGGIAEPRGDFHASMQLLETGLFDKAGFTRLHVAGHPEGN RDIDTTGDAGVMEALRWKQAFRDRTDADMAMATQFAFEAGPVIAWAERLQAEGITLPIHLGIAGPGKLQTLIKFAIACGV GNSLQVLQKRAKDVTKLLLPFEPNEIMADLATYKAAHPESLIESIHFFPLGGIKTNAKWAVTNGGAATEPVNGREAAFA
Sequences:
>Translated_319_residues MTFRETLMALLNFRKQAPAPTATSADMEALLQGYSIEVMPRTAEKVDDFRHYLPAGTRVYIAHIDGTPIEDMVATAARIR AEGYEPMPHFAARSIPDAATLADWIARYQGEADVRQGLILAGGIAEPRGDFHASMQLLETGLFDKAGFTRLHVAGHPEGN RDIDTTGDAGVMEALRWKQAFRDRTDADMAMATQFAFEAGPVIAWAERLQAEGITLPIHLGIAGPGKLQTLIKFAIACGV GNSLQVLQKRAKDVTKLLLPFEPNEIMADLATYKAAHPESLIESIHFFPLGGIKTNAKWAVTNGGAATEPVNGREAAFA >Mature_318_residues TFRETLMALLNFRKQAPAPTATSADMEALLQGYSIEVMPRTAEKVDDFRHYLPAGTRVYIAHIDGTPIEDMVATAARIRA EGYEPMPHFAARSIPDAATLADWIARYQGEADVRQGLILAGGIAEPRGDFHASMQLLETGLFDKAGFTRLHVAGHPEGNR DIDTTGDAGVMEALRWKQAFRDRTDADMAMATQFAFEAGPVIAWAERLQAEGITLPIHLGIAGPGKLQTLIKFAIACGVG NSLQVLQKRAKDVTKLLLPFEPNEIMADLATYKAAHPESLIESIHFFPLGGIKTNAKWAVTNGGAATEPVNGREAAFA
Specific function: Unknown
COG id: COG0685
COG function: function code E; 5,10-methylenetetrahydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34582; Mature: 34451
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFRETLMALLNFRKQAPAPTATSADMEALLQGYSIEVMPRTAEKVDDFRHYLPAGTRVY CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEE IAHIDGTPIEDMVATAARIRAEGYEPMPHFAARSIPDAATLADWIARYQGEADVRQGLIL EEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCHHHHCCEEE AGGIAEPRGDFHASMQLLETGLFDKAGFTRLHVAGHPEGNRDIDTTGDAGVMEALRWKQA ECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH FRDRTDADMAMATQFAFEAGPVIAWAERLQAEGITLPIHLGIAGPGKLQTLIKFAIACGV HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCC GNSLQVLQKRAKDVTKLLLPFEPNEIMADLATYKAAHPESLIESIHFFPLGGIKTNAKWA CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEE VTNGGAATEPVNGREAAFA EECCCCCCCCCCCCCCCCC >Mature Secondary Structure TFRETLMALLNFRKQAPAPTATSADMEALLQGYSIEVMPRTAEKVDDFRHYLPAGTRVY CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEE IAHIDGTPIEDMVATAARIRAEGYEPMPHFAARSIPDAATLADWIARYQGEADVRQGLIL EEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCHHHHCCEEE AGGIAEPRGDFHASMQLLETGLFDKAGFTRLHVAGHPEGNRDIDTTGDAGVMEALRWKQA ECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH FRDRTDADMAMATQFAFEAGPVIAWAERLQAEGITLPIHLGIAGPGKLQTLIKFAIACGV HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCC GNSLQVLQKRAKDVTKLLLPFEPNEIMADLATYKAAHPESLIESIHFFPLGGIKTNAKWA CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEE VTNGGAATEPVNGREAAFA EECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA