Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89054470

Identifier: 89054470

GI number: 89054470

Start: 1975060

End: 1975374

Strand: Reverse

Name: 89054470

Synonym: Jann_1979

Alternate gene names: NA

Gene position: 1975374-1975060 (Counterclockwise)

Preceding gene: 89054476

Following gene: 89054469

Centisome position: 45.75

GC content: 64.13

Gene sequence:

>315_bases
ATGCCCGCCATCACCCACGTTTTCTGGCGCGATATCCCCGCGCAGGTGATTATCGGCAAGGGCCGGTCAGGCGCGAAAGC
TCCGCTGCCCGAGCGGTTTGAGCAAGCGATTGACCGCGCCGCCATGAAGGTCGGCGCAAAAGATGACGACGCCTACCTGG
CTGGCTTCCATCGCGTGATCGTAGGGGAGGCCGACGGCGACCTGAAAGAAGCCGCCGCAGCGGAGGCCGCCAAACTTGAC
GCCGCATATGACACTACTCGCCTCAAGACCCTGATCGACGCGGAGGGGCATGACCCGTCCAAGCCTGCCACCTGA

Upstream 100 bases:

>100_bases
ACCCTGCGTGATGTCGAAAACAGGCCCGGTATGCCGTCATAGGCCACATATTGTGTCGGAAACCCGGGCAGGAATCGCAC
GCCCACATCGGAGAGAGCCC

Downstream 100 bases:

>100_bases
ATGACATTCCGGGAGACCCTCATGGCCCTTCTCAACTTCCGCAAGCAGGCGCCCGCGCCCACCGCCACCAGCGCCGATAT
GGAAGCCCTCCTGCAGGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MPAITHVFWRDIPAQVIIGKGRSGAKAPLPERFEQAIDRAAMKVGAKDDDAYLAGFHRVIVGEADGDLKEAAAAEAAKLD
AAYDTTRLKTLIDAEGHDPSKPAT

Sequences:

>Translated_104_residues
MPAITHVFWRDIPAQVIIGKGRSGAKAPLPERFEQAIDRAAMKVGAKDDDAYLAGFHRVIVGEADGDLKEAAAAEAAKLD
AAYDTTRLKTLIDAEGHDPSKPAT
>Mature_103_residues
PAITHVFWRDIPAQVIIGKGRSGAKAPLPERFEQAIDRAAMKVGAKDDDAYLAGFHRVIVGEADGDLKEAAAAEAAKLDA
AYDTTRLKTLIDAEGHDPSKPAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11084; Mature: 10952

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAITHVFWRDIPAQVIIGKGRSGAKAPLPERFEQAIDRAAMKVGAKDDDAYLAGFHRVI
CCCCHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEE
VGEADGDLKEAAAAEAAKLDAAYDTTRLKTLIDAEGHDPSKPAT
EECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PAITHVFWRDIPAQVIIGKGRSGAKAPLPERFEQAIDRAAMKVGAKDDDAYLAGFHRVI
CCCHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEE
VGEADGDLKEAAAAEAAKLDAAYDTTRLKTLIDAEGHDPSKPAT
EECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA