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The map label for this gene is yfjP [H]

Identifier: 89054455

GI number: 89054455

Start: 1957806

End: 1958483

Strand: Direct

Name: yfjP [H]

Synonym: Jann_1964

Alternate gene names: 89054455

Gene position: 1957806-1958483 (Clockwise)

Preceding gene: 89054453

Following gene: 89054456

Centisome position: 45.34

GC content: 66.96

Gene sequence:

>678_bases
GTGGGTGTCACGTTTTGTGGCGGCGCACGGCGGATGTGGCCCTGGACCGAGACCTGGAACCGCAAGATGCGCATAGAGAC
CGATGAAGATGTGGCGGAGGGCTTTGATCGCCTCCGAAAGATCGAGCCGAAGTTTGCAGTGATTTCAGGGCCTTTGCCGC
TGCGGCGCAGGCCGGACGGGTTCGGCGCGCTCTTGCATGCGATTGTGGGCCAGCAGGTGTCTACGGCGTCAGCGGCGGCG
ATCTGGGGGCGGGTTCAGTCCGCCGGCCTGCATCAGGAGACGGCGGTGGCCGCAGCGACTGAGGAGGCGTTGCGCGGCTG
CGGCTTGTCGCGACCCAAGGTGCGTTATGCCAAAGCGCTGTCGGAGGCGCGGATCGACTACGCAGCCCTGCGGGACGCGC
CCTTGGACGACGTGCTGGCCACGTTGATCGCGGTGCCGGGCATCGGGCGCTGGACGGCGGAAATCTACGCCAAGTTTGCG
CTGGGTCACGCGGATGTCTTTGCCGCCGGGGATCTGGCCTTGCAGGAGGGGGCCAGGCTGCTGTTCGATCTGCCCGAGCG
ACCTGCCGAGAAAGAGATGCGCGCCATGGCCGAGGCCTGGACGCCGGTCAGGGCCATTGCCGCCCGCGCGCTCTGGGCCT
ACTACCGGGAAAAGACCAAACGGGAGGGCGCGATATGA

Upstream 100 bases:

>100_bases
ATGACGTTGCGTTTTGCGGCGGCGTCGGAATCGACGGCAATGGGGGTGCTGTCAGTCATGGTCCGAGCGGTATAGGGTTT
GGGGCGGAGGGTCCAGATGG

Downstream 100 bases:

>100_bases
AAAATGTGCTGGATTACGGAACGAAACCCTCGGCGTCAGGCGATGTGACGTCGCTGGTGGTGTTCCTGCACGGCTATGGC
GCCGATGGGCGGGACCTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MGVTFCGGARRMWPWTETWNRKMRIETDEDVAEGFDRLRKIEPKFAVISGPLPLRRRPDGFGALLHAIVGQQVSTASAAA
IWGRVQSAGLHQETAVAAATEEALRGCGLSRPKVRYAKALSEARIDYAALRDAPLDDVLATLIAVPGIGRWTAEIYAKFA
LGHADVFAAGDLALQEGARLLFDLPERPAEKEMRAMAEAWTPVRAIAARALWAYYREKTKREGAI

Sequences:

>Translated_225_residues
MGVTFCGGARRMWPWTETWNRKMRIETDEDVAEGFDRLRKIEPKFAVISGPLPLRRRPDGFGALLHAIVGQQVSTASAAA
IWGRVQSAGLHQETAVAAATEEALRGCGLSRPKVRYAKALSEARIDYAALRDAPLDDVLATLIAVPGIGRWTAEIYAKFA
LGHADVFAAGDLALQEGARLLFDLPERPAEKEMRAMAEAWTPVRAIAARALWAYYREKTKREGAI
>Mature_224_residues
GVTFCGGARRMWPWTETWNRKMRIETDEDVAEGFDRLRKIEPKFAVISGPLPLRRRPDGFGALLHAIVGQQVSTASAAAI
WGRVQSAGLHQETAVAAATEEALRGCGLSRPKVRYAKALSEARIDYAALRDAPLDDVLATLIAVPGIGRWTAEIYAKFAL
GHADVFAAGDLALQEGARLLFDLPERPAEKEMRAMAEAWTPVRAIAARALWAYYREKTKREGAI

Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, 3-methylguanine, 7-methylguanine, O2- methylthymine, and O2-methylcytosine from the damaged DNA polymer formed by alkylation lesions [H]

COG id: COG0122

COG function: function code L; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alkylbase DNA glycosidase alkA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR003265
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF00730 HhH-GPD [H]

EC number: =3.2.2.21 [H]

Molecular weight: Translated: 24745; Mature: 24613

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVTFCGGARRMWPWTETWNRKMRIETDEDVAEGFDRLRKIEPKFAVISGPLPLRRRPDG
CCCEECCCCCCCCCCHHHHCCEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH
FGALLHAIVGQQVSTASAAAIWGRVQSAGLHQETAVAAATEEALRGCGLSRPKVRYAKAL
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
SEARIDYAALRDAPLDDVLATLIAVPGIGRWTAEIYAKFALGHADVFAAGDLALQEGARL
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHH
LFDLPERPAEKEMRAMAEAWTPVRAIAARALWAYYREKTKREGAI
HHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GVTFCGGARRMWPWTETWNRKMRIETDEDVAEGFDRLRKIEPKFAVISGPLPLRRRPDG
CCEECCCCCCCCCCHHHHCCEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH
FGALLHAIVGQQVSTASAAAIWGRVQSAGLHQETAVAAATEEALRGCGLSRPKVRYAKAL
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
SEARIDYAALRDAPLDDVLATLIAVPGIGRWTAEIYAKFALGHADVFAAGDLALQEGARL
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHH
LFDLPERPAEKEMRAMAEAWTPVRAIAARALWAYYREKTKREGAI
HHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]