Click here to switch to the map view.

The map label for this gene is yvoA [H]

Identifier: 89054431

GI number: 89054431

Start: 1930694

End: 1931428

Strand: Reverse

Name: yvoA [H]

Synonym: Jann_1940

Alternate gene names: 89054431

Gene position: 1931428-1930694 (Counterclockwise)

Preceding gene: 89054434

Following gene: 89054430

Centisome position: 44.73

GC content: 66.53

Gene sequence:

>735_bases
ATGCCCGAGACGTCAGACACAGACCCAAACTCGGGCGCTCTGCCGACCTATCTGCGCATCGCGGAGGCGCTCACGATCGA
CATTGGCGGGGGCCGTTTGTCCCCCGGTGAGAAGCTGCCCCCCGAACGCGCCATGGCCACCGAGCGCGGCGTGGCCGTGG
CCACGCTGCGCAAGGCGCTGCACCTTCTGGTTGAGCGCGGGCTGATCGAGCGGCGTCAGGGATCGGGCAATTACGTGCTG
GGGGGCGGGTCCAATATCGGGACCTACGCGCTGTTCCGGCTGGAGCTGAAGGGGATTGGCGGCGGGTTGCCCACGGCGAA
ACTTCTGGACATCAGGAAGACCAAAAAGCCCGACGATCTGCCCAATATTGGCGGCACGTTCGACGTCGGCATCCGGATGC
GGCGGCTGCGGGCTCTCGCGGATATCCCCGTCGCGGTGGAGGAGATCTGGCTGGACCTGCGCTGGCATGACGACAACGGT
CTGAACGCGCGCACGGTCTCCGAATCGCTCTACCGGACCTACGCCGACCGGCTGCACCTGCATATCCAGCACGCCGAGGA
TGTGATCAGCGCGGGTCCCCTGCCCGATTGGACGCCCGACGAATTGGGCCTGGCGCCCGGCACCCAGGTGGGGTTCATCG
AGCGGCGCGCCTATGACCAGCACGGCCTGCCCTGCGAGGCATCACGGACCTGGTTCGACCCGGACCGCGCGCAATATTTC
TCAAAAGTGCCCTGA

Upstream 100 bases:

>100_bases
GCCGTGCAGCCGCCCTTGACCACCTCTGGGCCAAGGCGTAGCAATCCGGGCAGGGTATATCAATGGTATATCAATTTCGG
CAAACGCGCGGGAGGTCGTG

Downstream 100 bases:

>100_bases
AGCGCGGGCGAAGGACGCAGAACATGACAAGATACGGCCTGATCGGGGCGGGAATGATGGGCCAGGAGCACATCCGCAAC
ATCGCCCTTTTGCCGGACAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MPETSDTDPNSGALPTYLRIAEALTIDIGGGRLSPGEKLPPERAMATERGVAVATLRKALHLLVERGLIERRQGSGNYVL
GGGSNIGTYALFRLELKGIGGGLPTAKLLDIRKTKKPDDLPNIGGTFDVGIRMRRLRALADIPVAVEEIWLDLRWHDDNG
LNARTVSESLYRTYADRLHLHIQHAEDVISAGPLPDWTPDELGLAPGTQVGFIERRAYDQHGLPCEASRTWFDPDRAQYF
SKVP

Sequences:

>Translated_244_residues
MPETSDTDPNSGALPTYLRIAEALTIDIGGGRLSPGEKLPPERAMATERGVAVATLRKALHLLVERGLIERRQGSGNYVL
GGGSNIGTYALFRLELKGIGGGLPTAKLLDIRKTKKPDDLPNIGGTFDVGIRMRRLRALADIPVAVEEIWLDLRWHDDNG
LNARTVSESLYRTYADRLHLHIQHAEDVISAGPLPDWTPDELGLAPGTQVGFIERRAYDQHGLPCEASRTWFDPDRAQYF
SKVP
>Mature_243_residues
PETSDTDPNSGALPTYLRIAEALTIDIGGGRLSPGEKLPPERAMATERGVAVATLRKALHLLVERGLIERRQGSGNYVLG
GGSNIGTYALFRLELKGIGGGLPTAKLLDIRKTKKPDDLPNIGGTFDVGIRMRRLRALADIPVAVEEIWLDLRWHDDNGL
NARTVSESLYRTYADRLHLHIQHAEDVISAGPLPDWTPDELGLAPGTQVGFIERRAYDQHGLPCEASRTWFDPDRAQYFS
KVP

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=154, Percent_Identity=32.4675324675325, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26840; Mature: 26709

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPETSDTDPNSGALPTYLRIAEALTIDIGGGRLSPGEKLPPERAMATERGVAVATLRKAL
CCCCCCCCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHH
HLLVERGLIERRQGSGNYVLGGGSNIGTYALFRLELKGIGGGLPTAKLLDIRKTKKPDDL
HHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCCC
PNIGGTFDVGIRMRRLRALADIPVAVEEIWLDLRWHDDNGLNARTVSESLYRTYADRLHL
CCCCCEEHHHHHHHHHHHHHCCCCEEEHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHEE
HIQHAEDVISAGPLPDWTPDELGLAPGTQVGFIERRAYDQHGLPCEASRTWFDPDRAQYF
EEEHHHHHHHCCCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
SKVP
HCCC
>Mature Secondary Structure 
PETSDTDPNSGALPTYLRIAEALTIDIGGGRLSPGEKLPPERAMATERGVAVATLRKAL
CCCCCCCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHH
HLLVERGLIERRQGSGNYVLGGGSNIGTYALFRLELKGIGGGLPTAKLLDIRKTKKPDDL
HHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCCC
PNIGGTFDVGIRMRRLRALADIPVAVEEIWLDLRWHDDNGLNARTVSESLYRTYADRLHL
CCCCCEEHHHHHHHHHHHHHCCCCEEEHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHEE
HIQHAEDVISAGPLPDWTPDELGLAPGTQVGFIERRAYDQHGLPCEASRTWFDPDRAQYF
EEEHHHHHHHCCCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
SKVP
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]