Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89054342
Identifier: 89054342
GI number: 89054342
Start: 1837997
End: 1838929
Strand: Reverse
Name: 89054342
Synonym: Jann_1851
Alternate gene names: NA
Gene position: 1838929-1837997 (Counterclockwise)
Preceding gene: 89054343
Following gene: 89054341
Centisome position: 42.59
GC content: 64.84
Gene sequence:
>933_bases ATGCGCGCCCCGGCCCTGATCTCTTTGGCGGCGGCGCTGGCCCTTTCGGCCTGCGTCACGATGCCTGTGGAGACCTCCCC CCGGCCTGCGCCTAGGGCGGAGGTGCCGGACGTGTCTGCGACCCCGTCGGAACTCAGCCAAAGCCTCGCGCGCTATTATC GCAGCACCGAGGCGCGCCTGGTGGGACGTGGGCTGTTGCGCACCGATGGCGGCGGGCCTGACACTCCGTTCAGCGCCGAA CAGCTGGCCGCGAACTTTGAACGCATCGCGCTTTATGATGAATACCAACTGGTGGGCGGGCGTTTCGTGGCGCGCCAGAC GCCCTCCACCCTGCGCCGCTGGCGCGCGCCTGTACGCGTTCAGCCCCATTTTGGCGCGTCGGTGGAAGCAGGCCAACAGG CCGAGGACCGGTCCGCCCTTGCGACCTACACAAATCGGCTGTCTCGCGTGACCGGACACCCGATCCGAACGGTGGATGCG GGCGGCAATTACCATGTATTGTTCATGAATGCCGACGCGCTGGCCGCCTCGGCCCCGGTGTTGCGAGAGCTTGTGCCAAG CATCAACGACGCCACGATCCGGGAAATCCAGAACATGGGCCGCCTGACCTATTGTTCGATCTTCGCTTTCTCGCCGAGCG GCACCTCTGAGTATATCACCGCGATCGCAGTGATCCGCGATGAGCATCCCGATCTGATGCGCCGCTCGTGCATCCATGAG GAAATTGCGCAAGGCCTGGGCCTGCCCAATGACAGTGCCGCCGCGCGACCCTCTATCTTCAATGACGACGAGGAATTCGC GCTGCTGACGCGCCACGATGAGCTTTTGCTGCGGATCCTGTACGATGACCGCCTAACCATCGGCCTGACGCCCGACGCGG CACGCGGCATCGTGCGCCAGATTGCGGCTGAACTTGTCGGCGGCCCGTCATAG
Upstream 100 bases:
>100_bases GAGCTGCGCGACACGCTGTCCTCGGCCTCGGCCAGGCGTCCGGTGGCCGATGCCGATGTCATCGAGGGCACTGCCACGCC CGCGCAGTCGTAAGGCTCCA
Downstream 100 bases:
>100_bases CACCCTTCTGAGCGCTGCCCTTCGGGCGCGTCCCTCCTCGCGCGCTGCGCACGCTCCTCGCAGGTCTCACCGCGCCTGCG GCGGGCTTACACCAGATTTG
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 310
Protein sequence:
>310_residues MRAPALISLAAALALSACVTMPVETSPRPAPRAEVPDVSATPSELSQSLARYYRSTEARLVGRGLLRTDGGGPDTPFSAE QLAANFERIALYDEYQLVGGRFVARQTPSTLRRWRAPVRVQPHFGASVEAGQQAEDRSALATYTNRLSRVTGHPIRTVDA GGNYHVLFMNADALAASAPVLRELVPSINDATIREIQNMGRLTYCSIFAFSPSGTSEYITAIAVIRDEHPDLMRRSCIHE EIAQGLGLPNDSAAARPSIFNDDEEFALLTRHDELLLRILYDDRLTIGLTPDAARGIVRQIAAELVGGPS
Sequences:
>Translated_310_residues MRAPALISLAAALALSACVTMPVETSPRPAPRAEVPDVSATPSELSQSLARYYRSTEARLVGRGLLRTDGGGPDTPFSAE QLAANFERIALYDEYQLVGGRFVARQTPSTLRRWRAPVRVQPHFGASVEAGQQAEDRSALATYTNRLSRVTGHPIRTVDA GGNYHVLFMNADALAASAPVLRELVPSINDATIREIQNMGRLTYCSIFAFSPSGTSEYITAIAVIRDEHPDLMRRSCIHE EIAQGLGLPNDSAAARPSIFNDDEEFALLTRHDELLLRILYDDRLTIGLTPDAARGIVRQIAAELVGGPS >Mature_310_residues MRAPALISLAAALALSACVTMPVETSPRPAPRAEVPDVSATPSELSQSLARYYRSTEARLVGRGLLRTDGGGPDTPFSAE QLAANFERIALYDEYQLVGGRFVARQTPSTLRRWRAPVRVQPHFGASVEAGQQAEDRSALATYTNRLSRVTGHPIRTVDA GGNYHVLFMNADALAASAPVLRELVPSINDATIREIQNMGRLTYCSIFAFSPSGTSEYITAIAVIRDEHPDLMRRSCIHE EIAQGLGLPNDSAAARPSIFNDDEEFALLTRHDELLLRILYDDRLTIGLTPDAARGIVRQIAAELVGGPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33650; Mature: 33650
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAPALISLAAALALSACVTMPVETSPRPAPRAEVPDVSATPSELSQSLARYYRSTEARL CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VGRGLLRTDGGGPDTPFSAEQLAANFERIALYDEYQLVGGRFVARQTPSTLRRWRAPVRV HHCCCEECCCCCCCCCCCHHHHHHCHHHEEEEHHHHHHCCEEEECCCHHHHHHHCCCCEE QPHFGASVEAGQQAEDRSALATYTNRLSRVTGHPIRTVDAGGNYHVLFMNADALAASAPV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCHHHHHHHH LRELVPSINDATIREIQNMGRLTYCSIFAFSPSGTSEYITAIAVIRDEHPDLMRRSCIHE HHHHHCCCCHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHH EIAQGLGLPNDSAAARPSIFNDDEEFALLTRHDELLLRILYDDRLTIGLTPDAARGIVRQ HHHHHCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCEEEEECCHHHHHHHHH IAAELVGGPS HHHHHHCCCC >Mature Secondary Structure MRAPALISLAAALALSACVTMPVETSPRPAPRAEVPDVSATPSELSQSLARYYRSTEARL CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VGRGLLRTDGGGPDTPFSAEQLAANFERIALYDEYQLVGGRFVARQTPSTLRRWRAPVRV HHCCCEECCCCCCCCCCCHHHHHHCHHHEEEEHHHHHHCCEEEECCCHHHHHHHCCCCEE QPHFGASVEAGQQAEDRSALATYTNRLSRVTGHPIRTVDAGGNYHVLFMNADALAASAPV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCHHHHHHHH LRELVPSINDATIREIQNMGRLTYCSIFAFSPSGTSEYITAIAVIRDEHPDLMRRSCIHE HHHHHCCCCHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHH EIAQGLGLPNDSAAARPSIFNDDEEFALLTRHDELLLRILYDDRLTIGLTPDAARGIVRQ HHHHHCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCEEEEECCHHHHHHHHH IAAELVGGPS HHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA