Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
---|---|
Accession | NC_007802 |
Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is yqiJ [C]
Identifier: 89054286
GI number: 89054286
Start: 1783515
End: 1784249
Strand: Reverse
Name: yqiJ [C]
Synonym: Jann_1795
Alternate gene names: 89054286
Gene position: 1784249-1783515 (Counterclockwise)
Preceding gene: 89054287
Following gene: 89054285
Centisome position: 41.32
GC content: 65.58
Gene sequence:
>735_bases ATGCTCGGCACACTTCTGTCAGGGCCATTCGTGCCCTTTACCCTGTCCCTCGCCCTCCTCTTTGGCCTGTTGGCTCTGGA GGTGGTGGTTCTGCTGCTTGGCGGGTCGCTCATGGGCGATAGCGGTGAGGTGGACGGGCCGGAGTTTGAGGCCGGTTTTG ACGCAGAAATGGACTTCGACATCGAGTTGGAGGCCATCGATATGGATGCGCTCGACGTGGATGTGGCCGATCTGGAGGTG GCAGATTTCGACCTGGAGGCCGGAGAAGTCGCCGCGGCCACGCCCTCGCCCCTTGGCTGGATGGGTCTGGGCAAGATGCC CACGCTGATCTGGCTGGCCTGCCTGTTCATGGCCTTCGGCGTCGCCGGAATGGCCTTGCAGGGCGCGGCCAGCGCACTCC TCGGCGGGCCGATCCCGGCCCTTCTCGCAGCGGTGCCGTGTGGATTGACCGCCGTATGGTTCACGGGCCGGTTTGGCGCG CTGTTCGCGCGGTTGATCCCGCGGTCTGAAAGCCAGAGCGTCTCGTCGCGCCAATTGGGCCGCCGCAAGGGCATTGTCAC CCAAGGCACGGCCCGTCGGGGTGTCCCGGCAGAGGTTCGGGTCACGGACCGCTATGGCAACACCCACCACCTGAGGGCCG AACCCCTCAAAGACACCGACGCCCTTCCCCAAGGCACAGAGGTTCTTGTTCTGCGCCACCGCCCCACCGGCGGGTTTCGT CTGATCGCGCTCTGA
Upstream 100 bases:
>100_bases AAGAGCATGTGGCGACCATCATCTGGTCCCGCGCCCCTTGTAACAAACCCGTGACGCCCCATATAATGTATACACAAGTA TACAATTGAGATTGGAAATA
Downstream 100 bases:
>100_bases GGCGGCCCCTTCGCCCCAAGCGCCCTATTTGAAAGGACTAACTCCATGGAATTTATTCTGATTATCGTCGCCGCCGTCAT TGGCTTTCTGGTCTTTGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MLGTLLSGPFVPFTLSLALLFGLLALEVVVLLLGGSLMGDSGEVDGPEFEAGFDAEMDFDIELEAIDMDALDVDVADLEV ADFDLEAGEVAAATPSPLGWMGLGKMPTLIWLACLFMAFGVAGMALQGAASALLGGPIPALLAAVPCGLTAVWFTGRFGA LFARLIPRSESQSVSSRQLGRRKGIVTQGTARRGVPAEVRVTDRYGNTHHLRAEPLKDTDALPQGTEVLVLRHRPTGGFR LIAL
Sequences:
>Translated_244_residues MLGTLLSGPFVPFTLSLALLFGLLALEVVVLLLGGSLMGDSGEVDGPEFEAGFDAEMDFDIELEAIDMDALDVDVADLEV ADFDLEAGEVAAATPSPLGWMGLGKMPTLIWLACLFMAFGVAGMALQGAASALLGGPIPALLAAVPCGLTAVWFTGRFGA LFARLIPRSESQSVSSRQLGRRKGIVTQGTARRGVPAEVRVTDRYGNTHHLRAEPLKDTDALPQGTEVLVLRHRPTGGFR LIAL >Mature_244_residues MLGTLLSGPFVPFTLSLALLFGLLALEVVVLLLGGSLMGDSGEVDGPEFEAGFDAEMDFDIELEAIDMDALDVDVADLEV ADFDLEAGEVAAATPSPLGWMGLGKMPTLIWLACLFMAFGVAGMALQGAASALLGGPIPALLAAVPCGLTAVWFTGRFGA LFARLIPRSESQSVSSRQLGRRKGIVTQGTARRGVPAEVRVTDRYGNTHHLRAEPLKDTDALPQGTEVLVLRHRPTGGFR LIAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral membrane protein (Potential) [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789429, Length=160, Percent_Identity=28.125, Blast_Score=65, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25688; Mature: 25688
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGTLLSGPFVPFTLSLALLFGLLALEVVVLLLGGSLMGDSGEVDGPEFEAGFDAEMDFD CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC IELEAIDMDALDVDVADLEVADFDLEAGEVAAATPSPLGWMGLGKMPTLIWLACLFMAFG EEEEEECCCCEECCHHHEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH VAGMALQGAASALLGGPIPALLAAVPCGLTAVWFTGRFGALFARLIPRSESQSVSSRQLG HHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEHHHCHHHHHHHHHCCCCCCCCHHHHHHH RRKGIVTQGTARRGVPAEVRVTDRYGNTHHLRAEPLKDTDALPQGTEVLVLRHRPTGGFR HHCCCEECCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCEE LIAL EEEC >Mature Secondary Structure MLGTLLSGPFVPFTLSLALLFGLLALEVVVLLLGGSLMGDSGEVDGPEFEAGFDAEMDFD CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC IELEAIDMDALDVDVADLEVADFDLEAGEVAAATPSPLGWMGLGKMPTLIWLACLFMAFG EEEEEECCCCEECCHHHEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH VAGMALQGAASALLGGPIPALLAAVPCGLTAVWFTGRFGALFARLIPRSESQSVSSRQLG HHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEHHHCHHHHHHHHHCCCCCCCCHHHHHHH RRKGIVTQGTARRGVPAEVRVTDRYGNTHHLRAEPLKDTDALPQGTEVLVLRHRPTGGFR HHCCCEECCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCEE LIAL EEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA