Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89054278
Identifier: 89054278
GI number: 89054278
Start: 1774630
End: 1775184
Strand: Reverse
Name: 89054278
Synonym: Jann_1787
Alternate gene names: NA
Gene position: 1775184-1774630 (Counterclockwise)
Preceding gene: 89054282
Following gene: 89054277
Centisome position: 41.11
GC content: 65.95
Gene sequence:
>555_bases ATGAACAGCCATATCTTGGCCCTGTCGCGGTTGGGCCGCGCCTCGGACACGGAGGTTTCTGTGGAACCCGACGCGGAGGC GCGCAAACGCATCGCGGAGGATCTGTCGCTGCTTAGCCTGCGCAAGCTCCGCCTGACCGGGACACTGACGGCCATGGGCA AATACGACTGGAACCTGCGCGCGCGATTGGGCGCCACGGCGGTGCAGGAATGTGTCGTGACGCTGGAGCCCGTGACCACG CGCATCGACACGGACCTGATCCGCAACTACGTGGTCGATCTGCCGGAACCGACCGAGGATGACTATGAGATCCCCGAAGA TGACACCACGGAGGCCCTGCCCCAGACCCTCGATCTGATCGCGTTGATCACCGAGGCGCTGGCCCTGGCCCTGCCCGACT ATCCCCGCGCAGAGGGGGTGGAACTGGGACAGGCGGTGTTCGCGGCCCCGGGTGTCGCGCCGATGACCGATGAGGACGCC AAGCCCCTCGCCGGTCTGGCGGCCCTGCGCGACAAGCTGGCGAAAGGCACAGATGACCCTGAAAACGAGGGCTAA
Upstream 100 bases:
>100_bases ATATCGGCTTAACGCAGGGGCGCGTCTGGGGCAAGCAAAGCGCCCTCACGACTCTGACATGCCCCAACGATGCGGAGCGA TTGAACGGCGGAGGATCGCA
Downstream 100 bases:
>100_bases ATGCAGCGCAAGCATTGCACTGGGCTGCTGCAGGGAATAGGGCTTGCATGGCTACGGAATCAGAGTATGTTCCCGGCCTC ATTCGCACCCCGGTTTGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 184; Mature: 184
Protein sequence:
>184_residues MNSHILALSRLGRASDTEVSVEPDAEARKRIAEDLSLLSLRKLRLTGTLTAMGKYDWNLRARLGATAVQECVVTLEPVTT RIDTDLIRNYVVDLPEPTEDDYEIPEDDTTEALPQTLDLIALITEALALALPDYPRAEGVELGQAVFAAPGVAPMTDEDA KPLAGLAALRDKLAKGTDDPENEG
Sequences:
>Translated_184_residues MNSHILALSRLGRASDTEVSVEPDAEARKRIAEDLSLLSLRKLRLTGTLTAMGKYDWNLRARLGATAVQECVVTLEPVTT RIDTDLIRNYVVDLPEPTEDDYEIPEDDTTEALPQTLDLIALITEALALALPDYPRAEGVELGQAVFAAPGVAPMTDEDA KPLAGLAALRDKLAKGTDDPENEG >Mature_184_residues MNSHILALSRLGRASDTEVSVEPDAEARKRIAEDLSLLSLRKLRLTGTLTAMGKYDWNLRARLGATAVQECVVTLEPVTT RIDTDLIRNYVVDLPEPTEDDYEIPEDDTTEALPQTLDLIALITEALALALPDYPRAEGVELGQAVFAAPGVAPMTDEDA KPLAGLAALRDKLAKGTDDPENEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19909; Mature: 19909
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSHILALSRLGRASDTEVSVEPDAEARKRIAEDLSLLSLRKLRLTGTLTAMGKYDWNLR CCCCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHH ARLGATAVQECVVTLEPVTTRIDTDLIRNYVVDLPEPTEDDYEIPEDDTTEALPQTLDLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH ALITEALALALPDYPRAEGVELGQAVFAAPGVAPMTDEDAKPLAGLAALRDKLAKGTDDP HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC ENEG CCCC >Mature Secondary Structure MNSHILALSRLGRASDTEVSVEPDAEARKRIAEDLSLLSLRKLRLTGTLTAMGKYDWNLR CCCCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHH ARLGATAVQECVVTLEPVTTRIDTDLIRNYVVDLPEPTEDDYEIPEDDTTEALPQTLDLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH ALITEALALALPDYPRAEGVELGQAVFAAPGVAPMTDEDAKPLAGLAALRDKLAKGTDDP HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC ENEG CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA