Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is bcsP31 [H]
Identifier: 89054220
GI number: 89054220
Start: 1720383
End: 1721372
Strand: Reverse
Name: bcsP31 [H]
Synonym: Jann_1729
Alternate gene names: 89054220
Gene position: 1721372-1720383 (Counterclockwise)
Preceding gene: 89054221
Following gene: 89054219
Centisome position: 39.87
GC content: 63.23
Gene sequence:
>990_bases ATGACATTCACCAAACTGGGCGCACTCACGCTGTCCACTGCCATCGTTGCAACCTCCGCCTTCGCGCAGGACGTCGACCG CACCGGCTGGCCCGAAAACTTCACCCTCGGCACCGCAGGCCAGGGCGGCACCTACTTTGCCTACGGCTCCGGTTGGGCCA ACCTGGTGGCGGACGAATTGGGCATTTCCGGCGCGGGTGAAATCACCGGCGGACCCATGCAGAACATGGCGCTGGTCCAC ACCGGCGAGGCGCAGTTCGGCATGACCACGATGGGCCCGGCGGCGGAAAGCCTGCAAGGCACCAACCCCATCGCCCCCGG CCTGCAAATGACCGGTGCCTGCGCGATGTTCCCGATGTACCAGACGCCCTTCGCGATCACCGTGCTGGCGTCCTCGGGCA TCGAGGCAATTTCCGATATCCCGGACGGTGCACGGATCGGCTTTGGCCCCGCAGGCTCCACCTCGGACACCTATTTCCCG CGCATGATGGAAACCCTCGGCATCGAGTTTGACCGTCGCAACGGCAACTGGACCGACCTGGGTGGTCAGGTGCAGGACGG CCTTCTGGACGTCATCGCCTTTGCAGCCGGTGTGCCGACACCTGCCGTGAGCCAGCTGGAAGTGCAGACCGACATCAACT TCATCGCCTTCACCGAAGAAGAGCAGGCGACGATCATGGAAACGTTCCCCGTATCGCCCTTCGTGATCCCGGCGGGCACC TATGAGACGCTGACCGAAGACGCGAACTCCGTATCGATGTGGAACTTCGCCATCGCCAATTGCGAGCTGCCCGACAGCTT CGTCTATTCCGTCGTGGACATCATCATGTCCGACAACGAGCGGATGATGGCGATCCACGGCGCGGCACGCTCCACGCTGC CAGAGAACTGGGACAAGAACGAAGTCCTGATGTGGCACCCCGGCGCGGCCCAGTGGTTCATTGAGAATGCCGGTGCGACC ATCGCCGACGACATGATCCACGGCGGCTGA
Upstream 100 bases:
>100_bases TTCGGTTGTCAGACTTAGTTAATGTCCTCACCAACACGCCAAGCGATCGGGATGGGAGCCCGCACGGGTGCCCGGTCGCA TAGACCTTAGGGAGACTATT
Downstream 100 bases:
>100_bases GCCGATCCCATCGGGCGGGCCTGTCCGCGGGCCCGCCCACCCTCTTTTTTTCCCCGGACATCAAATGTTTAGCCGCTCGC ATATGTCATACGAGGCGCTG
Product: TRAP transporter solute receptor TAXI family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MTFTKLGALTLSTAIVATSAFAQDVDRTGWPENFTLGTAGQGGTYFAYGSGWANLVADELGISGAGEITGGPMQNMALVH TGEAQFGMTTMGPAAESLQGTNPIAPGLQMTGACAMFPMYQTPFAITVLASSGIEAISDIPDGARIGFGPAGSTSDTYFP RMMETLGIEFDRRNGNWTDLGGQVQDGLLDVIAFAAGVPTPAVSQLEVQTDINFIAFTEEEQATIMETFPVSPFVIPAGT YETLTEDANSVSMWNFAIANCELPDSFVYSVVDIIMSDNERMMAIHGAARSTLPENWDKNEVLMWHPGAAQWFIENAGAT IADDMIHGG
Sequences:
>Translated_329_residues MTFTKLGALTLSTAIVATSAFAQDVDRTGWPENFTLGTAGQGGTYFAYGSGWANLVADELGISGAGEITGGPMQNMALVH TGEAQFGMTTMGPAAESLQGTNPIAPGLQMTGACAMFPMYQTPFAITVLASSGIEAISDIPDGARIGFGPAGSTSDTYFP RMMETLGIEFDRRNGNWTDLGGQVQDGLLDVIAFAAGVPTPAVSQLEVQTDINFIAFTEEEQATIMETFPVSPFVIPAGT YETLTEDANSVSMWNFAIANCELPDSFVYSVVDIIMSDNERMMAIHGAARSTLPENWDKNEVLMWHPGAAQWFIENAGAT IADDMIHGG >Mature_328_residues TFTKLGALTLSTAIVATSAFAQDVDRTGWPENFTLGTAGQGGTYFAYGSGWANLVADELGISGAGEITGGPMQNMALVHT GEAQFGMTTMGPAAESLQGTNPIAPGLQMTGACAMFPMYQTPFAITVLASSGIEAISDIPDGARIGFGPAGSTSDTYFPR MMETLGIEFDRRNGNWTDLGGQVQDGLLDVIAFAAGVPTPAVSQLEVQTDINFIAFTEEEQATIMETFPVSPFVIPAGTY ETLTEDANSVSMWNFAIANCELPDSFVYSVVDIIMSDNERMMAIHGAARSTLPENWDKNEVLMWHPGAAQWFIENAGATI ADDMIHGG
Specific function: Unknown
COG id: COG2358
COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015168 - InterPro: IPR011852 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 34873; Mature: 34742
Theoretical pI: Translated: 3.74; Mature: 3.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFTKLGALTLSTAIVATSAFAQDVDRTGWPENFTLGTAGQGGTYFAYGSGWANLVADEL CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEECCCHHHHHHHHH GISGAGEITGGPMQNMALVHTGEAQFGMTTMGPAAESLQGTNPIAPGLQMTGACAMFPMY CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCEECCCEEECCCC QTPFAITVLASSGIEAISDIPDGARIGFGPAGSTSDTYFPRMMETLGIEFDRRNGNWTDL CCCEEEEEEECCCCHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCC GGQVQDGLLDVIAFAAGVPTPAVSQLEVQTDINFIAFTEEEQATIMETFPVSPFVIPAGT CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEECCCCCCEEEEECCCCCEEEECCC YETLTEDANSVSMWNFAIANCELPDSFVYSVVDIIMSDNERMMAIHGAARSTLPENWDKN HHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCC EVLMWHPGAAQWFIENAGATIADDMIHGG CEEEECCCCCEEEEECCCCEEHHHHHCCC >Mature Secondary Structure TFTKLGALTLSTAIVATSAFAQDVDRTGWPENFTLGTAGQGGTYFAYGSGWANLVADEL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEECCCHHHHHHHHH GISGAGEITGGPMQNMALVHTGEAQFGMTTMGPAAESLQGTNPIAPGLQMTGACAMFPMY CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCEECCCEEECCCC QTPFAITVLASSGIEAISDIPDGARIGFGPAGSTSDTYFPRMMETLGIEFDRRNGNWTDL CCCEEEEEEECCCCHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCC GGQVQDGLLDVIAFAAGVPTPAVSQLEVQTDINFIAFTEEEQATIMETFPVSPFVIPAGT CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEECCCCCCEEEEECCCCCEEEECCC YETLTEDANSVSMWNFAIANCELPDSFVYSVVDIIMSDNERMMAIHGAARSTLPENWDKN HHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCC EVLMWHPGAAQWFIENAGATIADDMIHGG CEEEECCCCCEEEEECCCCEEHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3133283 [H]