Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89053884
Identifier: 89053884
GI number: 89053884
Start: 1362947
End: 1363873
Strand: Direct
Name: 89053884
Synonym: Jann_1393
Alternate gene names: NA
Gene position: 1362947-1363873 (Clockwise)
Preceding gene: 89053883
Following gene: 89053885
Centisome position: 31.56
GC content: 59.65
Gene sequence:
>927_bases ATGGGCGTACAAGAGACCAAGATTTACCCTATCAATACCGGTTGGCTTGAAGCTGATCTTGGCACGTACATCTTCTGGAA GGGCCCCGCGGGTCAAAAAATCTGGAACCCGGTCTATTGCCATTACGTGGACACCGGCACCCACAAGATCCTGATCGACA CGGGCCTGTGCGATGAAGAGCGCGCCACCAAGTACCACCATAAATGCGACAAGCGCGGCTGCCTTCAGGTTCATGAACAT CTGGAGCAGAAGCTTGGCGTGCACCCCGATGAGATCGACGCCGTCGTCTTTACGCATTTGCACTGGGATCACGTGCAGAA CATGAAGGAATTCAAGAACGCCCGTTACATCGCGCCGAAGGCTGAGATCGAAATGGCGTTCAATCCGCTGCCGCTCTACT ACCGCACCTACGAGTCCGGATATCTGGGGATCGAGCCTGCCTACACCGGCTGTGTGTTCGAGGCTGTGGAGGACGAATGC GAAGTTCTGCCCGGCATCACCATGTTCCACACGCCCGGCCATTCGGTCGGCCACATGGCGGTGACGGTCGCGACGTCTGC GGGGGATATCGTCGTCGCCGGCGACGCCATCTTCCAGGAGCGCAACATGGAGCCGAACGAGGCGGAGGGCTGGCGCTACT GGGTGCCCGCGCGGTTCGTGAACTCCTACGAGGGGTGGAAATCAGTCGAGGAACTCGACAAGCGCGCCGACTATATCCTT GCGTGCCACGACAAGGTGGCCAATGCGCGGTCCAATGTGTTCCCCTATGAGGGCATGCCGATCCGCAAGCGCCGCCAGCA CATTCCGGGCTTCAAGTTCTACTTCGGTGATATGCCCGCCGGAGCCACCGATAAGGCGGCACCTGCGCTGACAGCAGATG AGGCGAAGGAGTATCTCGCGAACCTCGTGCCGCCGACCCCGGACTGA
Upstream 100 bases:
>100_bases TGGCCGCCAACTAGGGTCGCTGGTATTTTTCGGCTTGCATTCGCACGCAAGGATGTCACTTTGCATACAAACGTGACTCG ACAAGCGAATGGAGGCCCCA
Downstream 100 bases:
>100_bases CAAACCATGACGCAAGTCATTGAAAGTTTGTCAGAAATATCTGATCGGTTTGACGCAATCGTGCTGGATCAATGGGGCGT GTTGCATGATGGCACCTCGC
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MGVQETKIYPINTGWLEADLGTYIFWKGPAGQKIWNPVYCHYVDTGTHKILIDTGLCDEERATKYHHKCDKRGCLQVHEH LEQKLGVHPDEIDAVVFTHLHWDHVQNMKEFKNARYIAPKAEIEMAFNPLPLYYRTYESGYLGIEPAYTGCVFEAVEDEC EVLPGITMFHTPGHSVGHMAVTVATSAGDIVVAGDAIFQERNMEPNEAEGWRYWVPARFVNSYEGWKSVEELDKRADYIL ACHDKVANARSNVFPYEGMPIRKRRQHIPGFKFYFGDMPAGATDKAAPALTADEAKEYLANLVPPTPD
Sequences:
>Translated_308_residues MGVQETKIYPINTGWLEADLGTYIFWKGPAGQKIWNPVYCHYVDTGTHKILIDTGLCDEERATKYHHKCDKRGCLQVHEH LEQKLGVHPDEIDAVVFTHLHWDHVQNMKEFKNARYIAPKAEIEMAFNPLPLYYRTYESGYLGIEPAYTGCVFEAVEDEC EVLPGITMFHTPGHSVGHMAVTVATSAGDIVVAGDAIFQERNMEPNEAEGWRYWVPARFVNSYEGWKSVEELDKRADYIL ACHDKVANARSNVFPYEGMPIRKRRQHIPGFKFYFGDMPAGATDKAAPALTADEAKEYLANLVPPTPD >Mature_307_residues GVQETKIYPINTGWLEADLGTYIFWKGPAGQKIWNPVYCHYVDTGTHKILIDTGLCDEERATKYHHKCDKRGCLQVHEHL EQKLGVHPDEIDAVVFTHLHWDHVQNMKEFKNARYIAPKAEIEMAFNPLPLYYRTYESGYLGIEPAYTGCVFEAVEDECE VLPGITMFHTPGHSVGHMAVTVATSAGDIVVAGDAIFQERNMEPNEAEGWRYWVPARFVNSYEGWKSVEELDKRADYILA CHDKVANARSNVFPYEGMPIRKRRQHIPGFKFYFGDMPAGATDKAAPALTADEAKEYLANLVPPTPD
Specific function: Involved in the degradation of pyridoxine or pyridoxamine (free, phosphate-unbound, forms of vitamin B6). Hydrolyzes 4-pyridoxolactone to 4-pyridoxic acid. Has lower activity toward N-hexanoyl-D,L-homoserine lactone, but is not active toward 5-pyridoxolac
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallo-beta-lactamase superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: =3.1.1.27 [H]
Molecular weight: Translated: 34925; Mature: 34794
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVQETKIYPINTGWLEADLGTYIFWKGPAGQKIWNPVYCHYVDTGTHKILIDTGLCDEE CCCCCCEEEEECCCEEEECCCEEEEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCCHH RATKYHHKCDKRGCLQVHEHLEQKLGVHPDEIDAVVFTHLHWDHVQNMKEFKNARYIAPK HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHCCCEECCCC AEIEMAFNPLPLYYRTYESGYLGIEPAYTGCVFEAVEDECEVLPGITMFHTPGHSVGHMA HHEEEEECCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEE VTVATSAGDIVVAGDAIFQERNMEPNEAEGWRYWVPARFVNSYEGWKSVEELDKRADYIL EEEEECCCCEEEECHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCEEE ACHDKVANARSNVFPYEGMPIRKRRQHIPGFKFYFGDMPAGATDKAAPALTADEAKEYLA EECHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH NLVPPTPD HCCCCCCC >Mature Secondary Structure GVQETKIYPINTGWLEADLGTYIFWKGPAGQKIWNPVYCHYVDTGTHKILIDTGLCDEE CCCCCEEEEECCCEEEECCCEEEEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCCHH RATKYHHKCDKRGCLQVHEHLEQKLGVHPDEIDAVVFTHLHWDHVQNMKEFKNARYIAPK HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHCCCEECCCC AEIEMAFNPLPLYYRTYESGYLGIEPAYTGCVFEAVEDECEVLPGITMFHTPGHSVGHMA HHEEEEECCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEE VTVATSAGDIVVAGDAIFQERNMEPNEAEGWRYWVPARFVNSYEGWKSVEELDKRADYIL EEEEECCCCEEEECHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCEEE ACHDKVANARSNVFPYEGMPIRKRRQHIPGFKFYFGDMPAGATDKAAPALTADEAKEYLA EECHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH NLVPPTPD HCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]