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The map label for this gene is yvoA [H]

Identifier: 89053850

GI number: 89053850

Start: 1323307

End: 1324056

Strand: Direct

Name: yvoA [H]

Synonym: Jann_1359

Alternate gene names: 89053850

Gene position: 1323307-1324056 (Clockwise)

Preceding gene: 89053849

Following gene: 89053851

Centisome position: 30.65

GC content: 63.47

Gene sequence:

>750_bases
ATGAGCATCACGGATTACCTGCGTGACGCGCCGCCGATCTTGTCGGGCAAGGGCCCGCGTTACATGCAGCTGCGCGAACG
GTTGAGTGACGCCATCGGTGCGGGTATCCTGACGCCCGGCAGCGCGCTTCCGTCGGAGCGGGAGATTGGCAATCTGACCG
ATCTGTCGCGCGTGACCGTGCGCAAGGCCATACAGGCGCTGGTGGACAGCGGCGATGTCGTCCAGCGGCAAGGGTCCGGG
TCGTTCGTGACCGAACGGGCGGAGCGGTTGCAGCAATCCCTGTCGCACCTGACGTCGTTCTCCGAAGATATGGCCCGTCG
CGGCATGTCCACCAAGGTTCAGATGCTGGAGCAAAGTGTTTGTCTGCCCTCCGCCGATGAGGTGGCGGCGCTCGGCATTG
AGAATGGCGCGTCTGTCTCTCGGCTGGCGCGTCTGCGTATGGCCGATGGACGTCCCTTGGCGATTGAGCGGGCGTCGCTG
CCTGTCGATATTCTGCCCAACCCCATGGAGGTCACGGCCTCGCTTTATGATGTGTTGGAGCGGCTCGACAGGCGTCCTGT
TCGGGCCGTTCAGAAAATATCAGCGATCAATCTGCAAGAGGCGGACGCGAGCCTGCTGGGGGTGCCTGCCGGGGCGGCGG
GGCTGCGGATCGAGCGTTTGTCCTATCTGGCGTCCGGCCAGATCGCGGAGTTCACAAAATCCATCTATCGCGGCGATGCC
TACGACTTCGTGGCAGAGCTGCGCCTTTGA

Upstream 100 bases:

>100_bases
TGCCAGCCGACATCGCAGCCCATCTGGCGGAGCCTGCGGGCACAGCGCTGGACGGCACGCTGATCCTTGCGGCGCAATTG
ACCCCGATGGGAGAGACGGC

Downstream 100 bases:

>100_bases
GAAAGGCTGCCAATCATGACTGAGACTACATCCCAGATGCGACGAGAGGTACTTGAGATCCCCGCCGCAATTGACCGATT
GCTATCGCAAGGCACGCCGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSITDYLRDAPPILSGKGPRYMQLRERLSDAIGAGILTPGSALPSEREIGNLTDLSRVTVRKAIQALVDSGDVVQRQGSG
SFVTERAERLQQSLSHLTSFSEDMARRGMSTKVQMLEQSVCLPSADEVAALGIENGASVSRLARLRMADGRPLAIERASL
PVDILPNPMEVTASLYDVLERLDRRPVRAVQKISAINLQEADASLLGVPAGAAGLRIERLSYLASGQIAEFTKSIYRGDA
YDFVAELRL

Sequences:

>Translated_249_residues
MSITDYLRDAPPILSGKGPRYMQLRERLSDAIGAGILTPGSALPSEREIGNLTDLSRVTVRKAIQALVDSGDVVQRQGSG
SFVTERAERLQQSLSHLTSFSEDMARRGMSTKVQMLEQSVCLPSADEVAALGIENGASVSRLARLRMADGRPLAIERASL
PVDILPNPMEVTASLYDVLERLDRRPVRAVQKISAINLQEADASLLGVPAGAAGLRIERLSYLASGQIAEFTKSIYRGDA
YDFVAELRL
>Mature_248_residues
SITDYLRDAPPILSGKGPRYMQLRERLSDAIGAGILTPGSALPSEREIGNLTDLSRVTVRKAIQALVDSGDVVQRQGSGS
FVTERAERLQQSLSHLTSFSEDMARRGMSTKVQMLEQSVCLPSADEVAALGIENGASVSRLARLRMADGRPLAIERASLP
VDILPNPMEVTASLYDVLERLDRRPVRAVQKISAINLQEADASLLGVPAGAAGLRIERLSYLASGQIAEFTKSIYRGDAY
DFVAELRL

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=232, Percent_Identity=29.7413793103448, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788418, Length=229, Percent_Identity=29.6943231441048, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082252, Length=206, Percent_Identity=28.6407766990291, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790118, Length=148, Percent_Identity=33.1081081081081, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790540, Length=212, Percent_Identity=29.7169811320755, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26995; Mature: 26864

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITDYLRDAPPILSGKGPRYMQLRERLSDAIGAGILTPGSALPSEREIGNLTDLSRVTV
CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCHHHHHHHHH
RKAIQALVDSGDVVQRQGSGSFVTERAERLQQSLSHLTSFSEDMARRGMSTKVQMLEQSV
HHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
CLPSADEVAALGIENGASVSRLARLRMADGRPLAIERASLPVDILPNPMEVTASLYDVLE
CCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
RLDRRPVRAVQKISAINLQEADASLLGVPAGAAGLRIERLSYLASGQIAEFTKSIYRGDA
HHCCCHHHHHHHHHHCCHHHHCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCH
YDFVAELRL
HHHHHHHCC
>Mature Secondary Structure 
SITDYLRDAPPILSGKGPRYMQLRERLSDAIGAGILTPGSALPSEREIGNLTDLSRVTV
CHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCHHHHHHHHH
RKAIQALVDSGDVVQRQGSGSFVTERAERLQQSLSHLTSFSEDMARRGMSTKVQMLEQSV
HHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
CLPSADEVAALGIENGASVSRLARLRMADGRPLAIERASLPVDILPNPMEVTASLYDVLE
CCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
RLDRRPVRAVQKISAINLQEADASLLGVPAGAAGLRIERLSYLASGQIAEFTKSIYRGDA
HHCCCHHHHHHHHHHCCHHHHCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCH
YDFVAELRL
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]