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The map label for this gene is secD

Identifier: 89053575

GI number: 89053575

Start: 1047889

End: 1049559

Strand: Direct

Name: secD

Synonym: Jann_1084

Alternate gene names: 89053575

Gene position: 1047889-1049559 (Clockwise)

Preceding gene: 89053574

Following gene: 89053576

Centisome position: 24.27

GC content: 64.75

Gene sequence:

>1671_bases
ATGCTGCAGATCCCGCTCCTGAACCGGCTGCTGATCATCTTGACGGTTCTTGTGGGCCTGAGTTTCGCGATGCCGAACTT
CTTTTACGGCACTGTGGAGCGGCACAATGATGCCCTGGCCGAGATTGAGAGGACGGGCGCGCAGACGCCGGAGCAGGTGG
CGGATGTGGCGGCCTGGCCAAGCTACCTGCCCGCGACGCTGGTGAACCTGGGTCTCGACCTGCGCGGCGGTGCGCATCTG
CTGGCGGAAGTTCAGGTCGAAGACGTCTATGTGCAGCGGATGGACAGTCTGTGGCCGGAAGTGCGCGATGCGCTGCGCGG
CCTGCGGGACACGGTGGGCACGATCCGCCGCATTGACGCGGAGCCGGGGCTTTTGCAGGTCCGCATCAGCCAGCCCGAAG
GAATGGCAGCCGCACTGGCCGCGGTCCGGGAATTGGGCCAGCCGGTCGTCAGCATCACCGGTGGGTTCGGCGAGAGCACG
CTGGATGTCAGCGGCGTGGGCGACATTATCACCGTGCGCCTGAGCGACGCCGAGCAGGCCGCCACCAACGACCGCACGTT
GCAGCAAAGCATCGAGATCGTGCGCCGTCGCGTCGATGAAGCGGGCACGCGAGAGCCGACAATTCAGCGTCAGGGCGCGG
ATCGCATCCTGATTCAGGTGCCCGGCATCGGGTCCGCGCAGGAGCTGAAAGAGCTGATCGGCACCACGGCTCGGCTGACC
TTCCATCCGGTTGTGGGACGCGCGAGTGGCCCTGATCAGGACACCGAAAGCCGCCAGATCATCCTGCCGTCGATTGATGA
GGGCGGCGGCTACTACATCTTGGAAGAAACGCCGGTCGTCTCCGGCGATGATCTTGTCGACAGCCAGCCGGGCTTTGAAC
AGCAGTCGGGCAACCCGATTGTGAGCTTCCGCTTCAACCCGTCGGGCGCGCGGGATTTCGGCGATTACACCGCCGCCAAT
GTCGGCGCGCCGTTCGCGATTGTGCTGGACAATGAGGTGATCAGCGCCCCGGTGATCCGGTCGGCCATCACCGGCGGCGC
GGGGCAGATCAGCGGCAGGTTCACGGTGGAAAGCTCCACCGAACTGGCGATCCTGCTGCGCGCGGGCGCATTGCCGGCGG
AAATGACGTTCCTGGAAGAACGCACCATCGGGCCAGAACTGGGCGCGGACAGCGTGCAGGCGGGCCAGACCGCCGCGCTG
ATCGCCTTCGCCGCTGTGCTGATCTTCATGATCGCCAGCTACGGTCTGTTCGGCGTGTTCGCGAGTATCGCGCTGGTCCT
GAACGTGGGCCTGATCTTTGGCGTTCTGTCCCTGATCGGGGCGACGCTGACCCTGCCGGGGATCGCCGGGATCGTGCTGA
CCATCGGTATGGCCGTCGATGCCAACGTGCTGGTGTTCGAGCGGATCCGCGAGGAATTGAAAACCGCCAAGGGCCCCGCG
AGGGCCATCGAGCTTGGCTATGAGCGCGCGCTCAGCGCCATCATCGACGCCAATATCACGACGTTCATCATCGCCACGAT
CCTGTTTGTTCTGGGCTCCGGCCCCGTGCGCGGCTTCTCCGTCACGCTGGGGATCGGGATCGTCACGTCGGTCTTCACCG
CGATCTACGTCACCCGCCTGTTGCTGGTCTTCTGGTTCGAGCGTCGTCGCCCGAAAACAATCGAGGTATAA

Upstream 100 bases:

>100_bases
GGTCCGGTCCAAAACCGAGCCCGCGAACGACTGACGATCTGGCCCGATTTTGCCGGGCCACCTGACCCTTTGGGCCACCT
GAGACTTTTAAGGACATTCC

Downstream 100 bases:

>100_bases
GAGATGCGCCTTCGCCTGGTCCCGCAAGAGACGTCCTTCGATTTCTTCAAATACGCCCGCGTCACCTTTGGCGCGTCCAT
CGTGGCGGTCATTGCCTCGC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 556; Mature: 556

Protein sequence:

>556_residues
MLQIPLLNRLLIILTVLVGLSFAMPNFFYGTVERHNDALAEIERTGAQTPEQVADVAAWPSYLPATLVNLGLDLRGGAHL
LAEVQVEDVYVQRMDSLWPEVRDALRGLRDTVGTIRRIDAEPGLLQVRISQPEGMAAALAAVRELGQPVVSITGGFGEST
LDVSGVGDIITVRLSDAEQAATNDRTLQQSIEIVRRRVDEAGTREPTIQRQGADRILIQVPGIGSAQELKELIGTTARLT
FHPVVGRASGPDQDTESRQIILPSIDEGGGYYILEETPVVSGDDLVDSQPGFEQQSGNPIVSFRFNPSGARDFGDYTAAN
VGAPFAIVLDNEVISAPVIRSAITGGAGQISGRFTVESSTELAILLRAGALPAEMTFLEERTIGPELGADSVQAGQTAAL
IAFAAVLIFMIASYGLFGVFASIALVLNVGLIFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKTAKGPA
RAIELGYERALSAIIDANITTFIIATILFVLGSGPVRGFSVTLGIGIVTSVFTAIYVTRLLLVFWFERRRPKTIEV

Sequences:

>Translated_556_residues
MLQIPLLNRLLIILTVLVGLSFAMPNFFYGTVERHNDALAEIERTGAQTPEQVADVAAWPSYLPATLVNLGLDLRGGAHL
LAEVQVEDVYVQRMDSLWPEVRDALRGLRDTVGTIRRIDAEPGLLQVRISQPEGMAAALAAVRELGQPVVSITGGFGEST
LDVSGVGDIITVRLSDAEQAATNDRTLQQSIEIVRRRVDEAGTREPTIQRQGADRILIQVPGIGSAQELKELIGTTARLT
FHPVVGRASGPDQDTESRQIILPSIDEGGGYYILEETPVVSGDDLVDSQPGFEQQSGNPIVSFRFNPSGARDFGDYTAAN
VGAPFAIVLDNEVISAPVIRSAITGGAGQISGRFTVESSTELAILLRAGALPAEMTFLEERTIGPELGADSVQAGQTAAL
IAFAAVLIFMIASYGLFGVFASIALVLNVGLIFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKTAKGPA
RAIELGYERALSAIIDANITTFIIATILFVLGSGPVRGFSVTLGIGIVTSVFTAIYVTRLLLVFWFERRRPKTIEV
>Mature_556_residues
MLQIPLLNRLLIILTVLVGLSFAMPNFFYGTVERHNDALAEIERTGAQTPEQVADVAAWPSYLPATLVNLGLDLRGGAHL
LAEVQVEDVYVQRMDSLWPEVRDALRGLRDTVGTIRRIDAEPGLLQVRISQPEGMAAALAAVRELGQPVVSITGGFGEST
LDVSGVGDIITVRLSDAEQAATNDRTLQQSIEIVRRRVDEAGTREPTIQRQGADRILIQVPGIGSAQELKELIGTTARLT
FHPVVGRASGPDQDTESRQIILPSIDEGGGYYILEETPVVSGDDLVDSQPGFEQQSGNPIVSFRFNPSGARDFGDYTAAN
VGAPFAIVLDNEVISAPVIRSAITGGAGQISGRFTVESSTELAILLRAGALPAEMTFLEERTIGPELGADSVQAGQTAAL
IAFAAVLIFMIASYGLFGVFASIALVLNVGLIFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKTAKGPA
RAIELGYERALSAIIDANITTFIIATILFVLGSGPVRGFSVTLGIGIVTSVFTAIYVTRLLLVFWFERRRPKTIEV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=532, Percent_Identity=34.0225563909774, Blast_Score=278, Evalue=9e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 59327; Mature: 59327

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQIPLLNRLLIILTVLVGLSFAMPNFFYGTVERHNDALAEIERTGAQTPEQVADVAAWP
CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCH
SYLPATLVNLGLDLRGGAHLLAEVQVEDVYVQRMDSLWPEVRDALRGLRDTVGTIRRIDA
HHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EPGLLQVRISQPEGMAAALAAVRELGQPVVSITGGFGESTLDVSGVGDIITVRLSDAEQA
CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEECCCCCEEEEEECCHHHH
ATNDRTLQQSIEIVRRRVDEAGTREPTIQRQGADRILIQVPGIGSAQELKELIGTTARLT
HCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEEEECCCCCCHHHHHHHHCCHHEEE
FHPVVGRASGPDQDTESRQIILPSIDEGGGYYILEETPVVSGDDLVDSQPGFEQQSGNPI
EEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
VSFRFNPSGARDFGDYTAANVGAPFAIVLDNEVISAPVIRSAITGGAGQISGRFTVESST
EEEEECCCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEECCCC
ELAILLRAGALPAEMTFLEERTIGPELGADSVQAGQTAALIAFAAVLIFMIASYGLFGVF
CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ASIALVLNVGLIFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKTAKGPA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
RAIELGYERALSAIIDANITTFIIATILFVLGSGPVRGFSVTLGIGIVTSVFTAIYVTRL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
LLVFWFERRRPKTIEV
HHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLQIPLLNRLLIILTVLVGLSFAMPNFFYGTVERHNDALAEIERTGAQTPEQVADVAAWP
CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCH
SYLPATLVNLGLDLRGGAHLLAEVQVEDVYVQRMDSLWPEVRDALRGLRDTVGTIRRIDA
HHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EPGLLQVRISQPEGMAAALAAVRELGQPVVSITGGFGESTLDVSGVGDIITVRLSDAEQA
CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEECCCCCEEEEEECCHHHH
ATNDRTLQQSIEIVRRRVDEAGTREPTIQRQGADRILIQVPGIGSAQELKELIGTTARLT
HCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEEEECCCCCCHHHHHHHHCCHHEEE
FHPVVGRASGPDQDTESRQIILPSIDEGGGYYILEETPVVSGDDLVDSQPGFEQQSGNPI
EEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
VSFRFNPSGARDFGDYTAANVGAPFAIVLDNEVISAPVIRSAITGGAGQISGRFTVESST
EEEEECCCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEECCCC
ELAILLRAGALPAEMTFLEERTIGPELGADSVQAGQTAALIAFAAVLIFMIASYGLFGVF
CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ASIALVLNVGLIFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKTAKGPA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
RAIELGYERALSAIIDANITTFIIATILFVLGSGPVRGFSVTLGIGIVTSVFTAIYVTRL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
LLVFWFERRRPKTIEV
HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9175857 [H]