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The map label for this gene is secF

Identifier: 89053576

GI number: 89053576

Start: 1049563

End: 1050549

Strand: Direct

Name: secF

Synonym: Jann_1085

Alternate gene names: 89053576

Gene position: 1049563-1050549 (Clockwise)

Preceding gene: 89053575

Following gene: 89053577

Centisome position: 24.31

GC content: 62.61

Gene sequence:

>987_bases
ATGCGCCTTCGCCTGGTCCCGCAAGAGACGTCCTTCGATTTCTTCAAATACGCCCGCGTCACCTTTGGCGCGTCCATCGT
GGCGGTCATTGCCTCGCTCGTGATCTGGCTGAGCGTCGGCCTGAATTTCGGCATCGACTTTCTGGGCGGCACGACGATCC
GCACCGACAGCACGGTGCAGGTGGAGGTGGCCGAATACCGCGCCGCGCTGGAGCCGTTGGGCCTGGGCGATGTGGTGATC
TCGGAAGTGTTCGACCCGAACTTCGCGGCGGACCAGCATGTGGTCACGGTGCGCATTCAGGCCCAGGAGGGCGCGGAGGC
GGTGACGCCGGAGATTATTCTGGCGATTGAGACGGCCCTGCTGGAGGCCGTGGACCCGGCGATGACCTTTCCATCGGTGG
AATCCGTGGGTCCCAAAGTTTCGGGTGAGTTGATCCAGACGGCGATCATCGCGGTTCTAGCGTCGCTTGGCGCGATCCTC
GTCTACATCTGGCTGCGGTTCGAATGGCAGTTCTCGGTCGGCGCCGTGGCGGCTCTGATCCACGACATCATCCTGACCAT
CGGCGTCTTCAGCCTGTTCCAGATCCGCTTTGACCTGGCCACCATTGCGGCCCTTCTGACCATCGTGGGCTATTCGATCA
ACGACACCGTGGTGATCTTCGACCGCCTGCGCGAGAACCTGATCAAATATAAGCAGAAGGCCCTGCGCGACGTCATGAAC
CTGTCCGCGAACGAGACGCTGTCGCGAACCTTGATGACCTCCGGCACCACCCTGATCGCGCTGATCGCGCTGATCGTTCT
GGGTGGCGACGTGATCCGGGGCTTCGTCTTTGCCATTGCCTGGGGCGTGGTCGTCGGGACCTATTCCTCGATCTACGTGG
CCAAGAATGTGGTCCTGATGATCGGCGTGAAGCGCGACTGGTCCAAGCCCACCGATGGCGGCGCGGGCGGCCCCGGGGGC
ACGCAATTCGCCAACGTCGATGCCTGA

Upstream 100 bases:

>100_bases
CGGGATCGTCACGTCGGTCTTCACCGCGATCTACGTCACCCGCCTGTTGCTGGTCTTCTGGTTCGAGCGTCGTCGCCCGA
AAACAATCGAGGTATAAGAG

Downstream 100 bases:

>100_bases
CGCGCATGTTTGAAGGTTGGGCTCTGGCCCTGGCCACGCCCGGGCTGGAATGGGTCATCGCGGCGGCTGTTCTGGCGGCT
TTGGTCTATGGTTTCGCGGG

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MRLRLVPQETSFDFFKYARVTFGASIVAVIASLVIWLSVGLNFGIDFLGGTTIRTDSTVQVEVAEYRAALEPLGLGDVVI
SEVFDPNFAADQHVVTVRIQAQEGAEAVTPEIILAIETALLEAVDPAMTFPSVESVGPKVSGELIQTAIIAVLASLGAIL
VYIWLRFEWQFSVGAVAALIHDIILTIGVFSLFQIRFDLATIAALLTIVGYSINDTVVIFDRLRENLIKYKQKALRDVMN
LSANETLSRTLMTSGTTLIALIALIVLGGDVIRGFVFAIAWGVVVGTYSSIYVAKNVVLMIGVKRDWSKPTDGGAGGPGG
TQFANVDA

Sequences:

>Translated_328_residues
MRLRLVPQETSFDFFKYARVTFGASIVAVIASLVIWLSVGLNFGIDFLGGTTIRTDSTVQVEVAEYRAALEPLGLGDVVI
SEVFDPNFAADQHVVTVRIQAQEGAEAVTPEIILAIETALLEAVDPAMTFPSVESVGPKVSGELIQTAIIAVLASLGAIL
VYIWLRFEWQFSVGAVAALIHDIILTIGVFSLFQIRFDLATIAALLTIVGYSINDTVVIFDRLRENLIKYKQKALRDVMN
LSANETLSRTLMTSGTTLIALIALIVLGGDVIRGFVFAIAWGVVVGTYSSIYVAKNVVLMIGVKRDWSKPTDGGAGGPGG
TQFANVDA
>Mature_328_residues
MRLRLVPQETSFDFFKYARVTFGASIVAVIASLVIWLSVGLNFGIDFLGGTTIRTDSTVQVEVAEYRAALEPLGLGDVVI
SEVFDPNFAADQHVVTVRIQAQEGAEAVTPEIILAIETALLEAVDPAMTFPSVESVGPKVSGELIQTAIIAVLASLGAIL
VYIWLRFEWQFSVGAVAALIHDIILTIGVFSLFQIRFDLATIAALLTIVGYSINDTVVIFDRLRENLIKYKQKALRDVMN
LSANETLSRTLMTSGTTLIALIALIVLGGDVIRGFVFAIAWGVVVGTYSSIYVAKNVVLMIGVKRDWSKPTDGGAGGPGG
TQFANVDA

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=298, Percent_Identity=37.5838926174497, Blast_Score=205, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35242; Mature: 35242

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRLVPQETSFDFFKYARVTFGASIVAVIASLVIWLSVGLNFGIDFLGGTTIRTDSTVQ
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEECCCEEE
VEVAEYRAALEPLGLGDVVISEVFDPNFAADQHVVTVRIQAQEGAEAVTPEIILAIETAL
EEHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHH
LEAVDPAMTFPSVESVGPKVSGELIQTAIIAVLASLGAILVYIWLRFEWQFSVGAVAALI
HHHHCHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHH
HDIILTIGVFSLFQIRFDLATIAALLTIVGYSINDTVVIFDRLRENLIKYKQKALRDVMN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC
LSANETLSRTLMTSGTTLIALIALIVLGGDVIRGFVFAIAWGVVVGTYSSIYVAKNVVLM
CCCCHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
IGVKRDWSKPTDGGAGGPGGTQFANVDA
EEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLRLVPQETSFDFFKYARVTFGASIVAVIASLVIWLSVGLNFGIDFLGGTTIRTDSTVQ
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEECCCEEE
VEVAEYRAALEPLGLGDVVISEVFDPNFAADQHVVTVRIQAQEGAEAVTPEIILAIETAL
EEHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHH
LEAVDPAMTFPSVESVGPKVSGELIQTAIIAVLASLGAILVYIWLRFEWQFSVGAVAALI
HHHHCHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHH
HDIILTIGVFSLFQIRFDLATIAALLTIVGYSINDTVVIFDRLRENLIKYKQKALRDVMN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC
LSANETLSRTLMTSGTTLIALIALIVLGGDVIRGFVFAIAWGVVVGTYSSIYVAKNVVLM
CCCCHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
IGVKRDWSKPTDGGAGGPGGTQFANVDA
EEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA