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The map label for this gene is yhfX [H]

Identifier: 89053375

GI number: 89053375

Start: 839663

End: 840862

Strand: Direct

Name: yhfX [H]

Synonym: Jann_0884

Alternate gene names: 89053375

Gene position: 839663-840862 (Clockwise)

Preceding gene: 89053374

Following gene: 89053376

Centisome position: 19.45

GC content: 61.08

Gene sequence:

>1200_bases
ATGTTTCTTGATCTTCTCACCCGACGCAACCCGGCCCTGATTGAGGCAGCCATCACGTTGCACCAGGACGGCAGGTTGCC
GGCAAATTGCTATGTTCTTGACCTAGACGCCGTTGAAGAGAACGCACGGATATTCTACGACAAGGCTAACGCGCTCGGCC
TCAAGACGTTTGCGATGACCAAGCAGGTCGGACGGCACTCTGGCTTCTGCGAAGCCGTGATGCGCGGCGGGATTGATCGC
TGCGTGGCCGTGGACATCGCCTGTGCCGTGGCCTGCCACCGCGCCGGGTTGGCGGTCGGGCACTTGGGCCATCTTGTGCA
GATCCCTGGTGCAGAGGCCGACCTTGCCGCTGGGTATCTGCAACCCGACTACTGGACTGTGTTCAGTGACGACAAGGCGG
ACGAAGCGGCGCAAGCGGCACATCGGGCAGGTCGTGACCAGGCTTTGCTGGCCCGCATCCAGACAGAGGGCGACACGTTC
TATCGTGGCCATGAAGGTGGCTTTGATGCAAAAACCATCGTCGACGTCGCCGACCGCATGGATGCCCGCGATGGCGCGCA
TTTCGCGGGCATTACCACGTTCCCGGCACTTCTGTTTGACCAAGATACCCGCCAGGTTGCACCCACCCCAAACCTTGCGA
CGTTAAATCGGGCGGCAGAGGCCTTGGCTCAGGCGGGGCGAAGCGGCATTGAGATTAATGCCCCCGGAACGACGTCATCC
GCGGTGCTTCCTGCCTTGGCGGACGCAGGCGCAACCCAGTGTGAACCGGGAAATGGGCTGCACGGAACAACCCCCCTTCA
TGCGGTTGAGGACCTGCCGGAGCGGCCAGCGGTGCTGTATCTCTCAGAGGTCTCGCACACCCATGCGGACAAGGCGTTCT
GCTTTGGTGGCGGTCTCTACATCGATCCGGTGTTTCCGGACTACGATGTTCAGGCAATCGTCGGCACCGATCCCAATGAC
AAATCTACGCGCTCCGTTGAAATCCCGCACCGCCAGTCGATTGACTACTACGGCATGATCGATGCGACCGGACCCACCAG
CCCTCAGACCGGCGATAGCGTCATCTTCGGGTTCCGTGGACAGGCTTTTGTGACACGCGCCTACATCGCCGGGATTTCCG
GGATTGCCAGCGGAAATCCGACCGTCACGACCATCGAGAACATATTCGGCCAGCGCGAAGCCTGGCCCGACCTGAGGTGA

Upstream 100 bases:

>100_bases
GGGCTTGCAGGTGTCTGACCAAATGATCGTTCGCGGTCTTATCATTCTCGTCGCGGTCGCCGCATCGCTGCGCGACACCA
CACGTTAACGGAGGACCAAC

Downstream 100 bases:

>100_bases
TCGCATGACACAACCTATCCTATCCCTCACGGATATTCACAAAGCGTTTGGCGGCGTTGTCGCAATCGACAACTTTTCGC
TCGATCTGCATCCGGGTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MFLDLLTRRNPALIEAAITLHQDGRLPANCYVLDLDAVEENARIFYDKANALGLKTFAMTKQVGRHSGFCEAVMRGGIDR
CVAVDIACAVACHRAGLAVGHLGHLVQIPGAEADLAAGYLQPDYWTVFSDDKADEAAQAAHRAGRDQALLARIQTEGDTF
YRGHEGGFDAKTIVDVADRMDARDGAHFAGITTFPALLFDQDTRQVAPTPNLATLNRAAEALAQAGRSGIEINAPGTTSS
AVLPALADAGATQCEPGNGLHGTTPLHAVEDLPERPAVLYLSEVSHTHADKAFCFGGGLYIDPVFPDYDVQAIVGTDPND
KSTRSVEIPHRQSIDYYGMIDATGPTSPQTGDSVIFGFRGQAFVTRAYIAGISGIASGNPTVTTIENIFGQREAWPDLR

Sequences:

>Translated_399_residues
MFLDLLTRRNPALIEAAITLHQDGRLPANCYVLDLDAVEENARIFYDKANALGLKTFAMTKQVGRHSGFCEAVMRGGIDR
CVAVDIACAVACHRAGLAVGHLGHLVQIPGAEADLAAGYLQPDYWTVFSDDKADEAAQAAHRAGRDQALLARIQTEGDTF
YRGHEGGFDAKTIVDVADRMDARDGAHFAGITTFPALLFDQDTRQVAPTPNLATLNRAAEALAQAGRSGIEINAPGTTSS
AVLPALADAGATQCEPGNGLHGTTPLHAVEDLPERPAVLYLSEVSHTHADKAFCFGGGLYIDPVFPDYDVQAIVGTDPND
KSTRSVEIPHRQSIDYYGMIDATGPTSPQTGDSVIFGFRGQAFVTRAYIAGISGIASGNPTVTTIENIFGQREAWPDLR
>Mature_399_residues
MFLDLLTRRNPALIEAAITLHQDGRLPANCYVLDLDAVEENARIFYDKANALGLKTFAMTKQVGRHSGFCEAVMRGGIDR
CVAVDIACAVACHRAGLAVGHLGHLVQIPGAEADLAAGYLQPDYWTVFSDDKADEAAQAAHRAGRDQALLARIQTEGDTF
YRGHEGGFDAKTIVDVADRMDARDGAHFAGITTFPALLFDQDTRQVAPTPNLATLNRAAEALAQAGRSGIEINAPGTTSS
AVLPALADAGATQCEPGNGLHGTTPLHAVEDLPERPAVLYLSEVSHTHADKAFCFGGGLYIDPVFPDYDVQAIVGTDPND
KSTRSVEIPHRQSIDYYGMIDATGPTSPQTGDSVIFGFRGQAFVTRAYIAGISGIASGNPTVTTIENIFGQREAWPDLR

Specific function: Unknown

COG id: COG3457

COG function: function code E; Predicted amino acid racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789782, Length=384, Percent_Identity=39.3229166666667, Blast_Score=257, Evalue=9e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 42549; Mature: 42549

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLDLLTRRNPALIEAAITLHQDGRLPANCYVLDLDAVEENARIFYDKANALGLKTFAMT
CCCHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHH
KQVGRHSGFCEAVMRGGIDRCVAVDIACAVACHRAGLAVGHLGHLVQIPGAEADLAAGYL
HHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEECCCCCCHHHHCCC
QPDYWTVFSDDKADEAAQAAHRAGRDQALLARIQTEGDTFYRGHEGGFDAKTIVDVADRM
CCCEEEEECCCCHHHHHHHHHHCCCCCEEEHEEECCCCEEEECCCCCCCHHHHHHHHHHC
DARDGAHFAGITTFPALLFDQDTRQVAPTPNLATLNRAAEALAQAGRSGIEINAPGTTSS
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCH
AVLPALADAGATQCEPGNGLHGTTPLHAVEDLPERPAVLYLSEVSHTHADKAFCFGGGLY
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEHHCCCCCCCEEEECCCEE
IDPVFPDYDVQAIVGTDPNDKSTRSVEIPHRQSIDYYGMIDATGPTSPQTGDSVIFGFRG
ECCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEECCC
QAFVTRAYIAGISGIASGNPTVTTIENIFGQREAWPDLR
CHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFLDLLTRRNPALIEAAITLHQDGRLPANCYVLDLDAVEENARIFYDKANALGLKTFAMT
CCCHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHH
KQVGRHSGFCEAVMRGGIDRCVAVDIACAVACHRAGLAVGHLGHLVQIPGAEADLAAGYL
HHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEECCCCCCHHHHCCC
QPDYWTVFSDDKADEAAQAAHRAGRDQALLARIQTEGDTFYRGHEGGFDAKTIVDVADRM
CCCEEEEECCCCHHHHHHHHHHCCCCCEEEHEEECCCCEEEECCCCCCCHHHHHHHHHHC
DARDGAHFAGITTFPALLFDQDTRQVAPTPNLATLNRAAEALAQAGRSGIEINAPGTTSS
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCH
AVLPALADAGATQCEPGNGLHGTTPLHAVEDLPERPAVLYLSEVSHTHADKAFCFGGGLY
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEHHCCCCCCCEEEECCCEE
IDPVFPDYDVQAIVGTDPNDKSTRSVEIPHRQSIDYYGMIDATGPTSPQTGDSVIFGFRG
ECCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEECCC
QAFVTRAYIAGISGIASGNPTVTTIENIFGQREAWPDLR
CHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]