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The map label for this gene is rbsC [H]

Identifier: 89053374

GI number: 89053374

Start: 838700

End: 839650

Strand: Direct

Name: rbsC [H]

Synonym: Jann_0883

Alternate gene names: 89053374

Gene position: 838700-839650 (Clockwise)

Preceding gene: 89053373

Following gene: 89053375

Centisome position: 19.42

GC content: 58.89

Gene sequence:

>951_bases
ATGTCGCCAACCGCAATCTTCCGCAAATATGAACTGCAGAACTATATCGTCTACCTCGGCTTTATCGTGATCTTCCTGTT
TTTCGCCGTAACGCTTCACGATGCGGGTTTTACGTCCAGCCGGAACCTGACCAACATTGTTCTGCAAACTGCGCCTGCAA
CGATTATGGCTATTGGTCTGGTGTTCGCGCTGTCGGCTGGCGAGATCGATCTTTCCTTCGGTTCAGCCGTTGCGGTTTCT
GCGCTATCCGCTGCGGTCGTCATGCAAGTTCTCCCAATGCCGGTGGCCGTTCTGGCCGGGCTCGGCGCTGGGCTGGCCGT
GGGGGCTTTCAACGGCATCTTGGTCGCCTGGCTGCGGCTGCCGTCATTCCTTGTGACGCTTGCAACACTGGGCCTGTTTG
CTGGCGTGGCCCGCACGATGACAGATTTGCGCTCAATCTCGGTGACCAACGATTTCTTCACCGGGTTTTTCGGGTCTGGC
GATCTCCTCGGCATTCCATCACTTGTCTGGTGGACGGCCATCGGCGTCGCGATCGGCCATTTTGTCTACCGCCATACCCG
GTTCGGGGCGCATGTTCTGGCGACGGGCGACAATGCGCGCGCCGCGCAGGTTTCGGGGATCAAGGTTCCACGGGTCCGTT
TCATGGTGCTGACAATCTGTGGTGGCTGTGCCGGACTGGCAGGACTGCTTTACGCAGGCCGCCTGCAATCTGCCACCTAC
ACCCTCGGAGAAAGCGATCTGATGATCGTGATTGCCGCGGTCATCGTGGGGGGCACCGCGTTGAATGGTGGCAAGGGCTC
CATCATCGGCGCCCTGATCGGTTCGCTCCTGATGGGGATGCTGAACAATGGGCTCATCCTGATGGGCTTGCAGGTGTCTG
ACCAAATGATCGTTCGCGGTCTTATCATTCTCGTCGCGGTCGCCGCATCGCTGCGCGACACCACACGTTAA

Upstream 100 bases:

>100_bases
TATCGACCTGGCCGACGGGGCATCACTGTTCCGTCGGCGGCTCCCCTGCGCCTTTCCTGACGGGCCGCTTTCTTCACCAT
CGCGAAACCGGAGTGCCGAG

Downstream 100 bases:

>100_bases
CGGAGGACCAACATGTTTCTTGATCTTCTCACCCGACGCAACCCGGCCCTGATTGAGGCAGCCATCACGTTGCACCAGGA
CGGCAGGTTGCCGGCAAATT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MSPTAIFRKYELQNYIVYLGFIVIFLFFAVTLHDAGFTSSRNLTNIVLQTAPATIMAIGLVFALSAGEIDLSFGSAVAVS
ALSAAVVMQVLPMPVAVLAGLGAGLAVGAFNGILVAWLRLPSFLVTLATLGLFAGVARTMTDLRSISVTNDFFTGFFGSG
DLLGIPSLVWWTAIGVAIGHFVYRHTRFGAHVLATGDNARAAQVSGIKVPRVRFMVLTICGGCAGLAGLLYAGRLQSATY
TLGESDLMIVIAAVIVGGTALNGGKGSIIGALIGSLLMGMLNNGLILMGLQVSDQMIVRGLIILVAVAASLRDTTR

Sequences:

>Translated_316_residues
MSPTAIFRKYELQNYIVYLGFIVIFLFFAVTLHDAGFTSSRNLTNIVLQTAPATIMAIGLVFALSAGEIDLSFGSAVAVS
ALSAAVVMQVLPMPVAVLAGLGAGLAVGAFNGILVAWLRLPSFLVTLATLGLFAGVARTMTDLRSISVTNDFFTGFFGSG
DLLGIPSLVWWTAIGVAIGHFVYRHTRFGAHVLATGDNARAAQVSGIKVPRVRFMVLTICGGCAGLAGLLYAGRLQSATY
TLGESDLMIVIAAVIVGGTALNGGKGSIIGALIGSLLMGMLNNGLILMGLQVSDQMIVRGLIILVAVAASLRDTTR
>Mature_315_residues
SPTAIFRKYELQNYIVYLGFIVIFLFFAVTLHDAGFTSSRNLTNIVLQTAPATIMAIGLVFALSAGEIDLSFGSAVAVSA
LSAAVVMQVLPMPVAVLAGLGAGLAVGAFNGILVAWLRLPSFLVTLATLGLFAGVARTMTDLRSISVTNDFFTGFFGSGD
LLGIPSLVWWTAIGVAIGHFVYRHTRFGAHVLATGDNARAAQVSGIKVPRVRFMVLTICGGCAGLAGLLYAGRLQSATYT
LGESDLMIVIAAVIVGGTALNGGKGSIIGALIGSLLMGMLNNGLILMGLQVSDQMIVRGLIILVAVAASLRDTTR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=283, Percent_Identity=39.9293286219081, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1788896, Length=311, Percent_Identity=35.6913183279743, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1790524, Length=280, Percent_Identity=35.7142857142857, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI145693152, Length=291, Percent_Identity=30.5841924398625, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI87082395, Length=267, Percent_Identity=31.4606741573034, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI145693214, Length=268, Percent_Identity=30.5970149253731, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787793, Length=272, Percent_Identity=30.8823529411765, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789992, Length=129, Percent_Identity=39.5348837209302, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788471, Length=313, Percent_Identity=32.9073482428115, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787794, Length=251, Percent_Identity=33.0677290836653, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32857; Mature: 32726

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPTAIFRKYELQNYIVYLGFIVIFLFFAVTLHDAGFTSSRNLTNIVLQTAPATIMAIGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHH
VFALSAGEIDLSFGSAVAVSALSAAVVMQVLPMPVAVLAGLGAGLAVGAFNGILVAWLRL
HHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
PSFLVTLATLGLFAGVARTMTDLRSISVTNDFFTGFFGSGDLLGIPSLVWWTAIGVAIGH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
FVYRHTRFGAHVLATGDNARAAQVSGIKVPRVRFMVLTICGGCAGLAGLLYAGRLQSATY
HHHHHHHCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
TLGESDLMIVIAAVIVGGTALNGGKGSIIGALIGSLLMGMLNNGLILMGLQVSDQMIVRG
ECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
LIILVAVAASLRDTTR
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SPTAIFRKYELQNYIVYLGFIVIFLFFAVTLHDAGFTSSRNLTNIVLQTAPATIMAIGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHH
VFALSAGEIDLSFGSAVAVSALSAAVVMQVLPMPVAVLAGLGAGLAVGAFNGILVAWLRL
HHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
PSFLVTLATLGLFAGVARTMTDLRSISVTNDFFTGFFGSGDLLGIPSLVWWTAIGVAIGH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
FVYRHTRFGAHVLATGDNARAAQVSGIKVPRVRFMVLTICGGCAGLAGLLYAGRLQSATY
HHHHHHHCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
TLGESDLMIVIAAVIVGGTALNGGKGSIIGALIGSLLMGMLNNGLILMGLQVSDQMIVRG
ECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
LIILVAVAASLRDTTR
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]