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The map label for this gene is yphF [C]

Identifier: 89053373

GI number: 89053373

Start: 837512

End: 838564

Strand: Direct

Name: yphF [C]

Synonym: Jann_0882

Alternate gene names: 89053373

Gene position: 837512-838564 (Clockwise)

Preceding gene: 89053372

Following gene: 89053374

Centisome position: 19.4

GC content: 57.83

Gene sequence:

>1053_bases
ATGAAATTCCATCAGAGCCTAGTGATCAGTGCGGCCGCACTCGCCTTCTCTGCGACCGCGGCCTTCGCACAAACGACAGG
ACCTCAGGGAGAGACCGCGACACCTTCGTCAGAAGTGACTGTGTCAGACGAACTTGCTGCCAGCCTGCAAGGCCAAGGCC
TTACAGCCGCTTTGCTTTGGCACGACCAGTCTGATTTCGTGAATGCTGTCACAGCAGGCGCAACAGACGAGTTTGAGCGT
CTGGGGATCGAAGTGATAATAACGACCTCTGCAGCCTTCGACGCGGCAACACAGCGTAGCGATATCGAAACCGCCCTTGT
GCGATCCCCCGACATCATCCTGTCACTGCCGCTTGACCCCGTGACATCGGCTGCAGCATTTCAGGAGGCGCGCGAAGAAG
AGGTCGCACTCGTCTTCCTTTCGAACCTTCCCGAAGGCTTTGAACACCCTGCGGATTACGCTGCGATTGTAACCGATGAC
CTGTTCCAGATGGGCAGACAGGCTGCGGATGCTCTTGCTGCATCCATCGGCGAAGAAGGCACCGTTGGTTGGATTTTCCA
TGATGCGAACTACTATGTGACCAACCAGCGCGACAACGCCTTCAGAACCACGATTGAAACCGATTACCCGAACATCGAAA
TCGTGGCTGAAGCTGGGATCAGCGATCCTGCGCGTGCCGAAGAAATCGCCAATGCAATGTTGCTGCGCAATCCCGACCTC
TCGGGCATCTACGTCACATGGGCAGGTCCAGCGGAGGGTGTCCTTGCTGCTTTGCGCGCAAACGGAAATACGACAACAAG
GCTTGTCACCCTTGATCTGAGCGAGCCGGTCGCTCTGGACATGGTCAACGGTGGCAACGTCGTGGCACTTGTCGCGGATG
AGGCCTACGAGCTGGGCCGCGCGATGGCTGCCGCCGGCGCCCGGCAGTATGCGGGCGAGGAAACACCCCCGTTTGTGGTC
GCACCCGCAATCACTGTTACAGCTGATAACATCGCAGAAGGTTGGATGCAGTCTCTGCATGTCGATGCCCCTGCCAGCCT
CACGGGTAACTGA

Upstream 100 bases:

>100_bases
TCAATCGACGAGTATTTCGCTGCCATCCGTGCCTTTGCACGGTTCATGGTGGCTTACTGCGGATCATCGGAAACTTGAAA
TCAACCAGGGAGACAAGAAC

Downstream 100 bases:

>100_bases
GACCTGAGGCGATCCGTATGACGGCCTGATCGCCATATCGACCTGGCCGACGGGGCATCACTGTTCCGTCGGCGGCTCCC
CTGCGCCTTTCCTGACGGGC

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LacI Family; Two-Component Sensor Histidine Kinase/Response Regulator

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MKFHQSLVISAAALAFSATAAFAQTTGPQGETATPSSEVTVSDELAASLQGQGLTAALLWHDQSDFVNAVTAGATDEFER
LGIEVIITTSAAFDAATQRSDIETALVRSPDIILSLPLDPVTSAAAFQEAREEEVALVFLSNLPEGFEHPADYAAIVTDD
LFQMGRQAADALAASIGEEGTVGWIFHDANYYVTNQRDNAFRTTIETDYPNIEIVAEAGISDPARAEEIANAMLLRNPDL
SGIYVTWAGPAEGVLAALRANGNTTTRLVTLDLSEPVALDMVNGGNVVALVADEAYELGRAMAAAGARQYAGEETPPFVV
APAITVTADNIAEGWMQSLHVDAPASLTGN

Sequences:

>Translated_350_residues
MKFHQSLVISAAALAFSATAAFAQTTGPQGETATPSSEVTVSDELAASLQGQGLTAALLWHDQSDFVNAVTAGATDEFER
LGIEVIITTSAAFDAATQRSDIETALVRSPDIILSLPLDPVTSAAAFQEAREEEVALVFLSNLPEGFEHPADYAAIVTDD
LFQMGRQAADALAASIGEEGTVGWIFHDANYYVTNQRDNAFRTTIETDYPNIEIVAEAGISDPARAEEIANAMLLRNPDL
SGIYVTWAGPAEGVLAALRANGNTTTRLVTLDLSEPVALDMVNGGNVVALVADEAYELGRAMAAAGARQYAGEETPPFVV
APAITVTADNIAEGWMQSLHVDAPASLTGN
>Mature_350_residues
MKFHQSLVISAAALAFSATAAFAQTTGPQGETATPSSEVTVSDELAASLQGQGLTAALLWHDQSDFVNAVTAGATDEFER
LGIEVIITTSAAFDAATQRSDIETALVRSPDIILSLPLDPVTSAAAFQEAREEEVALVFLSNLPEGFEHPADYAAIVTDD
LFQMGRQAADALAASIGEEGTVGWIFHDANYYVTNQRDNAFRTTIETDYPNIEIVAEAGISDPARAEEIANAMLLRNPDL
SGIYVTWAGPAEGVLAALRANGNTTTRLVTLDLSEPVALDMVNGGNVVALVADEAYELGRAMAAAGARQYAGEETPPFVV
APAITVTADNIAEGWMQSLHVDAPASLTGN

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yphdef. [C]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36758; Mature: 36758

Theoretical pI: Translated: 3.82; Mature: 3.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFHQSLVISAAALAFSATAAFAQTTGPQGETATPSSEVTVSDELAASLQGQGLTAALLW
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCEEEEEE
HDQSDFVNAVTAGATDEFERLGIEVIITTSAAFDAATQRSDIETALVRSPDIILSLPLDP
ECCHHHHHHHHCCCCHHHHHCCEEEEEEECCHHHHHHCCCCCHHHHHCCCCEEEECCCCC
VTSAAAFQEAREEEVALVFLSNLPEGFEHPADYAAIVTDDLFQMGRQAADALAASIGEEG
HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TVGWIFHDANYYVTNQRDNAFRTTIETDYPNIEIVAEAGISDPARAEEIANAMLLRNPDL
CEEEEEECCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHEEECCCC
SGIYVTWAGPAEGVLAALRANGNTTTRLVTLDLSEPVALDMVNGGNVVALVADEAYELGR
CEEEEEECCCHHHHEEEEECCCCCEEEEEEEECCCCEEEEEECCCCEEEEEECCHHHHHH
AMAAAGARQYAGEETPPFVVAPAITVTADNIAEGWMQSLHVDAPASLTGN
HHHHHHHHHHCCCCCCCEEEECEEEEEHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKFHQSLVISAAALAFSATAAFAQTTGPQGETATPSSEVTVSDELAASLQGQGLTAALLW
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCEEEEEE
HDQSDFVNAVTAGATDEFERLGIEVIITTSAAFDAATQRSDIETALVRSPDIILSLPLDP
ECCHHHHHHHHCCCCHHHHHCCEEEEEEECCHHHHHHCCCCCHHHHHCCCCEEEECCCCC
VTSAAAFQEAREEEVALVFLSNLPEGFEHPADYAAIVTDDLFQMGRQAADALAASIGEEG
HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TVGWIFHDANYYVTNQRDNAFRTTIETDYPNIEIVAEAGISDPARAEEIANAMLLRNPDL
CEEEEEECCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHEEECCCC
SGIYVTWAGPAEGVLAALRANGNTTTRLVTLDLSEPVALDMVNGGNVVALVADEAYELGR
CEEEEEECCCHHHHEEEEECCCCCEEEEEEEECCCCEEEEEECCCCEEEEEECCHHHHHH
AMAAAGARQYAGEETPPFVVAPAITVTADNIAEGWMQSLHVDAPASLTGN
HHHHHHHHHHCCCCCCCEEEECEEEEEHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA