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The map label for this gene is yodQ [H]

Identifier: 89053372

GI number: 89053372

Start: 836230

End: 837489

Strand: Direct

Name: yodQ [H]

Synonym: Jann_0881

Alternate gene names: 89053372

Gene position: 836230-837489 (Clockwise)

Preceding gene: 89053371

Following gene: 89053373

Centisome position: 19.37

GC content: 59.21

Gene sequence:

>1260_bases
ATGACCTTGGATGCGGCGATCGCCAGCCGTATTGGCGCGGCGCTTGACGAAGAAAAGGCGATTGCGCTGTTGAGGGGCGC
GGTCGCGCGCAACAGCATTACGGGGAATGAAGCGAACTTCGTCGATTTTCTCGCGGACGAAATGCGGGCCCGCGCGTTGT
CGCCCCAAAGTGAAGAGTTTCTTGAGGGCCGGCCCAATATTTGGGGGGCTCGGTCCGGCAATGCAGATGGGAAGCGGCTG
CAATTCATTGGCCATACCGACACCGTCCATGTCGATGGGTGGAGTGATCATTGGAACGGCACCGAACGTGAAGATCCGTT
TGGTGGCGCCGAAGTCGATGGTGCCATTTGGGGGCGTGGTGTCACTGACCTCAAAGGCGGGATCTGCGCGGCCTTGGCGG
CCCTGGACTTGCTTGATGGGGCTGGCATTCAGCTCGGTGGCGATGTTGCCTTCGCGTTCATCGGCGATGAGGAAAGTGGC
GAAGAGGGCACTGGTGTGAGCGCCGGGATCGCCCATTGGGCCGACATGGTTCAGGCCAACAAGATCCCGCGCCCGGACTT
CGCTGTCTATGTCGAACCAACAAGCCTTTCAGTCTACACCGCTCAGATCGGTTTCTTCATCGCGGATGTGACACTCACCG
GAACGTCCGCGTATTTTGGTCGGCCTGACCTTGGCGTCGATGCTTTGAAGGCAACCCATGCGGTATTGGCCTCTGTCTGG
AAGCATGCAGAAGCGCGCCAAGGATTGAGCGCGCATCCGTTGACGGGTCGATCATCCGTCCTCGTAACTGGATTGAATGG
GGGCGGCTACATCGCCGTTCCAGGCGAATGCAAGTTCTCGGTCATTGGGTCACTGAGGCCTGGCGACACCTTGGACGATG
CTGTTGCGGAGTTTGAAGCCGCGGTGCACATGGCGCCTGTCGAGGACGGCATCGAGATTGCGATCACCTATCCCGCCGGG
CGGGATCACCCCTATGGCGGGACGCCAGCCGAGATATCTCAGGATCTGCCAGAAGTGGCCCAGCTTCTGGACACCATCGC
CGACGTCAGCCCAGAACACAGCAAACTCGGCGGAGCGCCATTCTGGTCGGAAAGCTCGTTTCTTATCAACAAGCTGAACG
TCCCGACCGTTTACTGCGCACCGGGTGACATTGCCTGCTGCCACACATCGCAAGAGCACCTTTCAATCGACGAGTATTTC
GCTGCCATCCGTGCCTTTGCACGGTTCATGGTGGCTTACTGCGGATCATCGGAAACTTGA

Upstream 100 bases:

>100_bases
TCGGGTTGGCCCATCTGCATCACACAATTTTTGCAGCAGGTCTGAACAATGTGGAGATCGCGCTTCCGCAGCTCTCGGCG
CCGGCATGGAGGGGGGTTGC

Downstream 100 bases:

>100_bases
AATCAACCAGGGAGACAAGAACATGAAATTCCATCAGAGCCTAGTGATCAGTGCGGCCGCACTCGCCTTCTCTGCGACCG
CGGCCTTCGCACAAACGACA

Product: acetylornithine deacetylase

Products: acetate; L-ornithine

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTLDAAIASRIGAALDEEKAIALLRGAVARNSITGNEANFVDFLADEMRARALSPQSEEFLEGRPNIWGARSGNADGKRL
QFIGHTDTVHVDGWSDHWNGTEREDPFGGAEVDGAIWGRGVTDLKGGICAALAALDLLDGAGIQLGGDVAFAFIGDEESG
EEGTGVSAGIAHWADMVQANKIPRPDFAVYVEPTSLSVYTAQIGFFIADVTLTGTSAYFGRPDLGVDALKATHAVLASVW
KHAEARQGLSAHPLTGRSSVLVTGLNGGGYIAVPGECKFSVIGSLRPGDTLDDAVAEFEAAVHMAPVEDGIEIAITYPAG
RDHPYGGTPAEISQDLPEVAQLLDTIADVSPEHSKLGGAPFWSESSFLINKLNVPTVYCAPGDIACCHTSQEHLSIDEYF
AAIRAFARFMVAYCGSSET

Sequences:

>Translated_419_residues
MTLDAAIASRIGAALDEEKAIALLRGAVARNSITGNEANFVDFLADEMRARALSPQSEEFLEGRPNIWGARSGNADGKRL
QFIGHTDTVHVDGWSDHWNGTEREDPFGGAEVDGAIWGRGVTDLKGGICAALAALDLLDGAGIQLGGDVAFAFIGDEESG
EEGTGVSAGIAHWADMVQANKIPRPDFAVYVEPTSLSVYTAQIGFFIADVTLTGTSAYFGRPDLGVDALKATHAVLASVW
KHAEARQGLSAHPLTGRSSVLVTGLNGGGYIAVPGECKFSVIGSLRPGDTLDDAVAEFEAAVHMAPVEDGIEIAITYPAG
RDHPYGGTPAEISQDLPEVAQLLDTIADVSPEHSKLGGAPFWSESSFLINKLNVPTVYCAPGDIACCHTSQEHLSIDEYF
AAIRAFARFMVAYCGSSET
>Mature_418_residues
TLDAAIASRIGAALDEEKAIALLRGAVARNSITGNEANFVDFLADEMRARALSPQSEEFLEGRPNIWGARSGNADGKRLQ
FIGHTDTVHVDGWSDHWNGTEREDPFGGAEVDGAIWGRGVTDLKGGICAALAALDLLDGAGIQLGGDVAFAFIGDEESGE
EGTGVSAGIAHWADMVQANKIPRPDFAVYVEPTSLSVYTAQIGFFIADVTLTGTSAYFGRPDLGVDALKATHAVLASVWK
HAEARQGLSAHPLTGRSSVLVTGLNGGGYIAVPGECKFSVIGSLRPGDTLDDAVAEFEAAVHMAPVEDGIEIAITYPAGR
DHPYGGTPAEISQDLPEVAQLLDTIADVSPEHSKLGGAPFWSESSFLINKLNVPTVYCAPGDIACCHTSQEHLSIDEYFA
AIRAFARFMVAYCGSSET

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1790395, Length=230, Percent_Identity=26.9565217391304, Blast_Score=62, Evalue=1e-10,
Organism=Escherichia coli, GI1789236, Length=281, Percent_Identity=25.2669039145907, Blast_Score=62, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010182
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: 3.5.1.16

Molecular weight: Translated: 44138; Mature: 44006

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDAAIASRIGAALDEEKAIALLRGAVARNSITGNEANFVDFLADEMRARALSPQSEEF
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
LEGRPNIWGARSGNADGKRLQFIGHTDTVHVDGWSDHWNGTEREDPFGGAEVDGAIWGRG
HCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCC
VTDLKGGICAALAALDLLDGAGIQLGGDVAFAFIGDEESGEEGTGVSAGIAHWADMVQAN
CHHHCCHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC
KIPRPDFAVYVEPTSLSVYTAQIGFFIADVTLTGTSAYFGRPDLGVDALKATHAVLASVW
CCCCCCEEEEEECCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
KHAEARQGLSAHPLTGRSSVLVTGLNGGGYIAVPGECKFSVIGSLRPGDTLDDAVAEFEA
HHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHH
AVHMAPVEDGIEIAITYPAGRDHPYGGTPAEISQDLPEVAQLLDTIADVSPEHSKLGGAP
HEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC
FWSESSFLINKLNVPTVYCAPGDIACCHTSQEHLSIDEYFAAIRAFARFMVAYCGSSET
CCCCCCCEEEECCCCEEEECCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TLDAAIASRIGAALDEEKAIALLRGAVARNSITGNEANFVDFLADEMRARALSPQSEEF
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
LEGRPNIWGARSGNADGKRLQFIGHTDTVHVDGWSDHWNGTEREDPFGGAEVDGAIWGRG
HCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCC
VTDLKGGICAALAALDLLDGAGIQLGGDVAFAFIGDEESGEEGTGVSAGIAHWADMVQAN
CHHHCCHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC
KIPRPDFAVYVEPTSLSVYTAQIGFFIADVTLTGTSAYFGRPDLGVDALKATHAVLASVW
CCCCCCEEEEEECCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
KHAEARQGLSAHPLTGRSSVLVTGLNGGGYIAVPGECKFSVIGSLRPGDTLDDAVAEFEA
HHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHH
AVHMAPVEDGIEIAITYPAGRDHPYGGTPAEISQDLPEVAQLLDTIADVSPEHSKLGGAP
HEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC
FWSESSFLINKLNVPTVYCAPGDIACCHTSQEHLSIDEYFAAIRAFARFMVAYCGSSET
CCCCCCCEEEECCCCEEEECCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N2-acetyl-L-ornithine; H2O

Specific reaction: N2-acetyl-L-ornithine + H2O = acetate + L-ornithine

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]