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The map label for this gene is xylR [H]

Identifier: 89053371

GI number: 89053371

Start: 835022

End: 836233

Strand: Direct

Name: xylR [H]

Synonym: Jann_0880

Alternate gene names: 89053371

Gene position: 835022-836233 (Clockwise)

Preceding gene: 89053367

Following gene: 89053372

Centisome position: 19.34

GC content: 58.75

Gene sequence:

>1212_bases
ATGATTGGATCAAGAAGCCTTTCTCGACAGTTTTCACGTAGCGCCGTGGTTCAGGCGATTGCGTCCGCGGGCCCGATTTC
GAGGGCGAGCTTGGCAAAACAGGTTGGTCTTTCCAAACAGACAGTTTCTGAAATCGTATCCGGCCTCGAGAGTGATGGGT
GGATTATCGAAACCGGTCGGACCGCTGGTCACGTCGGGCGATCAGCAACGACCTACGAATTGGTCCCGGACGCGGCATTT
GTGTGCGGCGTTGACCTCGGTGGCACAAAGGTCCGCGCCGCGATCATCGATCTGACCTGCACCGTCGTGGCCGAGTTGAC
CGAACCGACTGATCCGCAAGGTGGCACCGATCTTGTACAACAAATCGGTCAGCTATGCCGGAATGCTGCGCTACAGGCAT
GTGTGGATTGGTCTAGGGTTATGTTTGCGACCATTGGCGTCCCCGGTGTCCCGGATCAGAAGTCGGGATCGGTGAAGATG
GCCCCGAATATCGACAAGATTGGCGACATGGATTTCGCCGGAGCCTTGGAGGCGGAGTTTGGCTTCGGTGTTCAGGTCGA
AAACGACGTGAACCTCGCCGCGATTGGTGAGCAGTGGAGTGGCTGCGCGTCCGAAGTCGATAATATGGCATTTGTGTCGC
TCGGCACAGGCATTGGCGCAGGGATTATCGTGGGTGGGCAAATCATACGTGGCGCCATGGGGGCGGCGGGAGAACTTGGC
TTTCTGCCGTTCGGGGCGGACCCTTTCGAGCCTAGCTCACTCAGAGCGGGCGCCCTGGAGCGTCAGGCCGGTTCTTTTGG
CATGATAGGCCGATATTCGGAACTTGCGGGCAAAGACGTCCAGGTCAAAGAACTGTTCGATCTCGCACAGGCCGGAGATG
AACACGCCGACATTGTGCTGGAAGAGACTGCCCGGCTGGTCGCTCGTTTGATTGCAACAATCGGCGCAGTTGTCGATCCG
TCGATGGTTGTCCTAGGCGGGTCAATCGGGCAGCGCAGGGAGCTGCAGGAGCGTATCGAAGTTGCGCTTGCGGACTGTTT
TCCAAACCCGATCGACATCAGGCGCTCGGCCCTTGGCAATCATGCGGCCCTCGTCGGCGGTGCAGCGGTCGGGTTGGCCC
ATCTGCATCACACAATTTTTGCAGCAGGTCTGAACAATGTGGAGATCGCGCTTCCGCAGCTCTCGGCGCCGGCATGGAGG
GGGGTTGCATGA

Upstream 100 bases:

>100_bases
TCAGTTGAGATGCGTGACCGCGGCGTTCGACAAAACGAAAAGGATACTTGACAAACAATCGTATTTATTCGTTCACTTAC
CGAACTAATGGAGTGGCCGG

Downstream 100 bases:

>100_bases
CCTTGGATGCGGCGATCGCCAGCCGTATTGGCGCGGCGCTTGACGAAGAAAAGGCGATTGCGCTGTTGAGGGGCGCGGTC
GCGCGCAACAGCATTACGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MIGSRSLSRQFSRSAVVQAIASAGPISRASLAKQVGLSKQTVSEIVSGLESDGWIIETGRTAGHVGRSATTYELVPDAAF
VCGVDLGGTKVRAAIIDLTCTVVAELTEPTDPQGGTDLVQQIGQLCRNAALQACVDWSRVMFATIGVPGVPDQKSGSVKM
APNIDKIGDMDFAGALEAEFGFGVQVENDVNLAAIGEQWSGCASEVDNMAFVSLGTGIGAGIIVGGQIIRGAMGAAGELG
FLPFGADPFEPSSLRAGALERQAGSFGMIGRYSELAGKDVQVKELFDLAQAGDEHADIVLEETARLVARLIATIGAVVDP
SMVVLGGSIGQRRELQERIEVALADCFPNPIDIRRSALGNHAALVGGAAVGLAHLHHTIFAAGLNNVEIALPQLSAPAWR
GVA

Sequences:

>Translated_403_residues
MIGSRSLSRQFSRSAVVQAIASAGPISRASLAKQVGLSKQTVSEIVSGLESDGWIIETGRTAGHVGRSATTYELVPDAAF
VCGVDLGGTKVRAAIIDLTCTVVAELTEPTDPQGGTDLVQQIGQLCRNAALQACVDWSRVMFATIGVPGVPDQKSGSVKM
APNIDKIGDMDFAGALEAEFGFGVQVENDVNLAAIGEQWSGCASEVDNMAFVSLGTGIGAGIIVGGQIIRGAMGAAGELG
FLPFGADPFEPSSLRAGALERQAGSFGMIGRYSELAGKDVQVKELFDLAQAGDEHADIVLEETARLVARLIATIGAVVDP
SMVVLGGSIGQRRELQERIEVALADCFPNPIDIRRSALGNHAALVGGAAVGLAHLHHTIFAAGLNNVEIALPQLSAPAWR
GVA
>Mature_403_residues
MIGSRSLSRQFSRSAVVQAIASAGPISRASLAKQVGLSKQTVSEIVSGLESDGWIIETGRTAGHVGRSATTYELVPDAAF
VCGVDLGGTKVRAAIIDLTCTVVAELTEPTDPQGGTDLVQQIGQLCRNAALQACVDWSRVMFATIGVPGVPDQKSGSVKM
APNIDKIGDMDFAGALEAEFGFGVQVENDVNLAAIGEQWSGCASEVDNMAFVSLGTGIGAGIIVGGQIIRGAMGAAGELG
FLPFGADPFEPSSLRAGALERQAGSFGMIGRYSELAGKDVQVKELFDLAQAGDEHADIVLEETARLVARLIATIGAVVDP
SMVVLGGSIGQRRELQERIEVALADCFPNPIDIRRSALGNHAALVGGAAVGLAHLHHTIFAAGLNNVEIALPQLSAPAWR
GVA

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=404, Percent_Identity=26.2376237623762, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787363, Length=308, Percent_Identity=25.3246753246753, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787878, Length=379, Percent_Identity=20.3166226912929, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081733, Length=269, Percent_Identity=26.7657992565056, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 41666; Mature: 41666

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGSRSLSRQFSRSAVVQAIASAGPISRASLAKQVGLSKQTVSEIVSGLESDGWIIETGR
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEECCC
TAGHVGRSATTYELVPDAAFVCGVDLGGTKVRAAIIDLTCTVVAELTEPTDPQGGTDLVQ
CHHCCCCCCCEEEECCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHH
QIGQLCRNAALQACVDWSRVMFATIGVPGVPDQKSGSVKMAPNIDKIGDMDFAGALEAEF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCC
GFGVQVENDVNLAAIGEQWSGCASEVDNMAFVSLGTGIGAGIIVGGQIIRGAMGAAGELG
CCCEEECCCCCEEECCCHHHHHHHHHCCEEEEEECCCCCCHHEECHHHHHHHCCCCCCCC
FLPFGADPFEPSSLRAGALERQAGSFGMIGRYSELAGKDVQVKELFDLAQAGDEHADIVL
CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHHHH
EETARLVARLIATIGAVVDPSMVVLGGSIGQRRELQERIEVALADCFPNPIDIRRSALGN
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
HAALVGGAAVGLAHLHHTIFAAGLNNVEIALPQLSAPAWRGVA
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MIGSRSLSRQFSRSAVVQAIASAGPISRASLAKQVGLSKQTVSEIVSGLESDGWIIETGR
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEECCC
TAGHVGRSATTYELVPDAAFVCGVDLGGTKVRAAIIDLTCTVVAELTEPTDPQGGTDLVQ
CHHCCCCCCCEEEECCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHH
QIGQLCRNAALQACVDWSRVMFATIGVPGVPDQKSGSVKMAPNIDKIGDMDFAGALEAEF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCC
GFGVQVENDVNLAAIGEQWSGCASEVDNMAFVSLGTGIGAGIIVGGQIIRGAMGAAGELG
CCCEEECCCCCEEECCCHHHHHHHHHCCEEEEEECCCCCCHHEECHHHHHHHCCCCCCCC
FLPFGADPFEPSSLRAGALERQAGSFGMIGRYSELAGKDVQVKELFDLAQAGDEHADIVL
CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHHHH
EETARLVARLIATIGAVVDPSMVVLGGSIGQRRELQERIEVALADCFPNPIDIRRSALGN
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
HAALVGGAAVGLAHLHHTIFAAGLNNVEIALPQLSAPAWRGVA
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]