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The map label for this gene is cydB [H]

Identifier: 89053228

GI number: 89053228

Start: 707407

End: 708420

Strand: Direct

Name: cydB [H]

Synonym: Jann_0737

Alternate gene names: 89053228

Gene position: 707407-708420 (Clockwise)

Preceding gene: 89053227

Following gene: 89053230

Centisome position: 16.38

GC content: 60.16

Gene sequence:

>1014_bases
ATGTTTCCCGATTTCGCAAACCCGGCCGAATGGCTGCCTTGGGCCTTCGCGTCGCTGATGGGGTTCTCGATCCTCGTCTA
CGTTGTGTTGGACGGCTTCGATCTGGGTGTCGGCATCCTCTTTCCGTTCGCAGAGGATGCCGAAAAGGACCGGATGATCG
GCTCCATCGGCCCGTTCTGGGATGCCAACGAGACGTGGCTGGTGCTGGCGGTGGGGCTGCTTCTGGTGGCGTTCCCCTCC
GCCCACGGGTTGATTCTGACGACATTGTATCTGCCGGTTTTCATCATGCTCATTGGGTTGATCTTGCGTGGTGTGGCGTT
TGAGTTCCGGGCCAAGGCCCACGCCAAGCACAAAAAACTGTGGAACAACTTGTTCTTCGTGGGCTCCACCATGACCGCGC
TGAGCCAGGGTTTCATGCTGGGTCTCTACATCATGGGGTTGGAGCAGACCTGGGCGACATATGCCTTTGCGGCGTTGACG
GCGGTGTTCCTGACGGTGGGTTACAGCTTCATCGGAGCTGCATGGTTGATCCACAAGACCGAGGGGGCGTTACAGCTGAA
ATCCGTGCAATGGGCGCGGGAGAGCCTTTGGGGCGTGATCCTTGGCATCGGGGCGGTGTCTCTGGCCACGCCGCTGGTCT
CCACCCGGATCTTTGATCGCTGGTTGCAGTTCCCCGAAGCGCTTTGGCTCGCGCCGATCCCGGTTATCTCAGGCCTGATG
GTCCTGTGGCTGTGGCGCATGGTGCGGGTCATGCCTTACGCAGGCGATGTGCGATCCTGGCTGCCCTTCGCGGTGGCGAC
GGGCCTGTTTTCGTTGGCGTATGTGGGGATGGCGTACAGCTTCTACCCTTATGTGGTGCCGGAGCGGTTGACGATCTACG
AGGCCGCGGCAGCGCCTGAGAGTTTGCTGATCATCCTCGTGGGGGCCTGTTTTGTGGTGCCGGTGATCGCCGGATACTCA
ATTCTTGCCTACACCATCTTTCGCGGTAAGGCGACGGAGCTGCGCTACGACTGA

Upstream 100 bases:

>100_bases
CGCGCGGAAGGCCGCACGGGGCGAGGACGGGCGCGCGATCAACATGGCCCATTCGGGCAAGGCGCAGGTCGAAGCCCTGC
AACCGGCGGAGTAACCCCTG

Downstream 100 bases:

>100_bases
CAGTGTGCTCTTTCCAAAAGGAGCCCGTGCCGCGCATTCTTTCTATTAAGGGGGGCTTGGCCCCCCATGCGTCTTTTCCT
GAGGGAAAAGATCGCAGCCC

Product: cytochrome bd ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MFPDFANPAEWLPWAFASLMGFSILVYVVLDGFDLGVGILFPFAEDAEKDRMIGSIGPFWDANETWLVLAVGLLLVAFPS
AHGLILTTLYLPVFIMLIGLILRGVAFEFRAKAHAKHKKLWNNLFFVGSTMTALSQGFMLGLYIMGLEQTWATYAFAALT
AVFLTVGYSFIGAAWLIHKTEGALQLKSVQWARESLWGVILGIGAVSLATPLVSTRIFDRWLQFPEALWLAPIPVISGLM
VLWLWRMVRVMPYAGDVRSWLPFAVATGLFSLAYVGMAYSFYPYVVPERLTIYEAAAAPESLLIILVGACFVVPVIAGYS
ILAYTIFRGKATELRYD

Sequences:

>Translated_337_residues
MFPDFANPAEWLPWAFASLMGFSILVYVVLDGFDLGVGILFPFAEDAEKDRMIGSIGPFWDANETWLVLAVGLLLVAFPS
AHGLILTTLYLPVFIMLIGLILRGVAFEFRAKAHAKHKKLWNNLFFVGSTMTALSQGFMLGLYIMGLEQTWATYAFAALT
AVFLTVGYSFIGAAWLIHKTEGALQLKSVQWARESLWGVILGIGAVSLATPLVSTRIFDRWLQFPEALWLAPIPVISGLM
VLWLWRMVRVMPYAGDVRSWLPFAVATGLFSLAYVGMAYSFYPYVVPERLTIYEAAAAPESLLIILVGACFVVPVIAGYS
ILAYTIFRGKATELRYD
>Mature_337_residues
MFPDFANPAEWLPWAFASLMGFSILVYVVLDGFDLGVGILFPFAEDAEKDRMIGSIGPFWDANETWLVLAVGLLLVAFPS
AHGLILTTLYLPVFIMLIGLILRGVAFEFRAKAHAKHKKLWNNLFFVGSTMTALSQGFMLGLYIMGLEQTWATYAFAALT
AVFLTVGYSFIGAAWLIHKTEGALQLKSVQWARESLWGVILGIGAVSLATPLVSTRIFDRWLQFPEALWLAPIPVISGLM
VLWLWRMVRVMPYAGDVRSWLPFAVATGLFSLAYVGMAYSFYPYVVPERLTIYEAAAAPESLLIILVGACFVVPVIAGYS
ILAYTIFRGKATELRYD

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787213, Length=187, Percent_Identity=29.9465240641711, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1786954, Length=187, Percent_Identity=29.9465240641711, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37395; Mature: 37395

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPDFANPAEWLPWAFASLMGFSILVYVVLDGFDLGVGILFPFAEDAEKDRMIGSIGPFW
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHHCCCCCCC
DANETWLVLAVGLLLVAFPSAHGLILTTLYLPVFIMLIGLILRGVAFEFRAKAHAKHKKL
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WNNLFFVGSTMTALSQGFMLGLYIMGLEQTWATYAFAALTAVFLTVGYSFIGAAWLIHKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
EGALQLKSVQWARESLWGVILGIGAVSLATPLVSTRIFDRWLQFPEALWLAPIPVISGLM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
VLWLWRMVRVMPYAGDVRSWLPFAVATGLFSLAYVGMAYSFYPYVVPERLTIYEAAAAPE
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHEEEHHCCCH
SLLIILVGACFVVPVIAGYSILAYTIFRGKATELRYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFPDFANPAEWLPWAFASLMGFSILVYVVLDGFDLGVGILFPFAEDAEKDRMIGSIGPFW
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHHCCCCCCC
DANETWLVLAVGLLLVAFPSAHGLILTTLYLPVFIMLIGLILRGVAFEFRAKAHAKHKKL
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WNNLFFVGSTMTALSQGFMLGLYIMGLEQTWATYAFAALTAVFLTVGYSFIGAAWLIHKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
EGALQLKSVQWARESLWGVILGIGAVSLATPLVSTRIFDRWLQFPEALWLAPIPVISGLM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
VLWLWRMVRVMPYAGDVRSWLPFAVATGLFSLAYVGMAYSFYPYVVPERLTIYEAAAAPE
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHEEEHHCCCH
SLLIILVGACFVVPVIAGYSILAYTIFRGKATELRYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]