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The map label for this gene is cydA [H]

Identifier: 89053227

GI number: 89053227

Start: 705964

End: 707400

Strand: Direct

Name: cydA [H]

Synonym: Jann_0736

Alternate gene names: 89053227

Gene position: 705964-707400 (Clockwise)

Preceding gene: 89053226

Following gene: 89053228

Centisome position: 16.35

GC content: 61.66

Gene sequence:

>1437_bases
ATGGAAGGTCTCGACACCCTCATTCTCAGCCGCATTCAGTTTGCGGCCAATATCTCGTTCCACATCCTGTTCCCGACGAT
CACGATCGCTTTGGGCTGGGTGTTGTTCTTCTTCCGGGTGCGGTTCGCGCAGACCCAGGACGACAAATGGATGAACATGT
ACCGCTTCTGGGTGAAAATCTTCGCCCTCAGCTTCGCCATGGGCGTTGTGTCAGGGATCACCATGTCGTTCCAGTTCGGC
ACCAACTGGCCGGGCTTCATGGAAACCGTCGGCAATATCGCGGGCCCGCTGCTGGCCTATGAGGTACTGACGGCGTTCTT
CCTGGAGGCCGTGTTCATCGGCATCATGCTGTTCGGGTTCTCCCGCGTGCCGGGGTGGCTGCATATGCTGGCCACGGGTC
TTGTGGCGTTTGGAACGACCGTATCGGCGTTCTGGATCATCGTGCTCAACAGCTGGATGCATACACCACAAGGCTTCGAG
ATGATTGACGGTGTGGCTTTCGCGACCGACTGGTGGGCGATCATCTTCAACCCCTCCATGCCATACCGGTTCGCGCATAT
GTGGATCGCGTCTGGTCTGACCGTGGCGTTCCTGATCGCCGGTGTTTCGGCCTTCCGCTGGCTTCTGGGCGACCGCTCGC
GCGATGTGCGCACGGCATTGAAGGTGGGCGTGTCCATCGGCGCGCTGCTGATCCCTGTGCAGATTTTCCTGGGGGATCTT
CATGGCCTCAACACCAAAGAATATCAGCCCGCAAAAGTCGCTGCCATGGAGGGCCTGTGGGAGACCGGGACCAACGTGCC
GCTGATCCTGTTTGCAATCCCCGATGAAGCCGCGCGCGAAAACCATGCCGAGATCGGGATACCGGGCCTCGCGTCGCTGA
TCCTCACCCATTCGTGGGATGGGGAGTTGCAAGGCCTCAACGACTTCGTGGCGGAGGACGGGACCGTTCTTCACCCACCC
GTCGCCCCCATTTTCTATAGTTTCCGCGTGATGGTGGGCACGGGCATGGCGATGCTGGCCCTGTCGTGGTTTGGCGTCTT
TATGATGTGGAAGCGCCGCCGCATGCACCCAAACCCCGGGGCGTGCCATTGGTTGGCCGTCGAAGGCTTGCCGAAGATCT
ACCTCTGGGCGCTGGTGCCGATGGCGTTCAGCGGCTGGGTCGCCACACTGGCCGGGTGGTACACGACAGAGATCGGGCGG
CAGCCATGGCTCGTTCAGGGCGTCATGACGACGGAAATGGCCGTGGCCGACGTGCCGGCGCCGATGGTGGCGGGAACGCT
GGTGGGCTACCTCGTGGTCTACGGGTTGCTGCTGTTCGCCTATATCAGCGTCATCGTCTACCTCGCGCGGAAGGCCGCAC
GGGGCGAGGACGGGCGCGCGATCAACATGGCCCATTCGGGCAAGGCGCAGGTCGAAGCCCTGCAACCGGCGGAGTAA

Upstream 100 bases:

>100_bases
GAACGGCTCGTGAAGATGATGACATTGGGCAGCAAGATCGCCGGTTTGGTCGACAAGGCCAGCGGTGCTTTCGCCCTGAC
GAAGCGGAAAGGATAGACCG

Downstream 100 bases:

>100_bases
CCCCTGATGTTTCCCGATTTCGCAAACCCGGCCGAATGGCTGCCTTGGGCCTTCGCGTCGCTGATGGGGTTCTCGATCCT
CGTCTACGTTGTGTTGGACG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MEGLDTLILSRIQFAANISFHILFPTITIALGWVLFFFRVRFAQTQDDKWMNMYRFWVKIFALSFAMGVVSGITMSFQFG
TNWPGFMETVGNIAGPLLAYEVLTAFFLEAVFIGIMLFGFSRVPGWLHMLATGLVAFGTTVSAFWIIVLNSWMHTPQGFE
MIDGVAFATDWWAIIFNPSMPYRFAHMWIASGLTVAFLIAGVSAFRWLLGDRSRDVRTALKVGVSIGALLIPVQIFLGDL
HGLNTKEYQPAKVAAMEGLWETGTNVPLILFAIPDEAARENHAEIGIPGLASLILTHSWDGELQGLNDFVAEDGTVLHPP
VAPIFYSFRVMVGTGMAMLALSWFGVFMMWKRRRMHPNPGACHWLAVEGLPKIYLWALVPMAFSGWVATLAGWYTTEIGR
QPWLVQGVMTTEMAVADVPAPMVAGTLVGYLVVYGLLLFAYISVIVYLARKAARGEDGRAINMAHSGKAQVEALQPAE

Sequences:

>Translated_478_residues
MEGLDTLILSRIQFAANISFHILFPTITIALGWVLFFFRVRFAQTQDDKWMNMYRFWVKIFALSFAMGVVSGITMSFQFG
TNWPGFMETVGNIAGPLLAYEVLTAFFLEAVFIGIMLFGFSRVPGWLHMLATGLVAFGTTVSAFWIIVLNSWMHTPQGFE
MIDGVAFATDWWAIIFNPSMPYRFAHMWIASGLTVAFLIAGVSAFRWLLGDRSRDVRTALKVGVSIGALLIPVQIFLGDL
HGLNTKEYQPAKVAAMEGLWETGTNVPLILFAIPDEAARENHAEIGIPGLASLILTHSWDGELQGLNDFVAEDGTVLHPP
VAPIFYSFRVMVGTGMAMLALSWFGVFMMWKRRRMHPNPGACHWLAVEGLPKIYLWALVPMAFSGWVATLAGWYTTEIGR
QPWLVQGVMTTEMAVADVPAPMVAGTLVGYLVVYGLLLFAYISVIVYLARKAARGEDGRAINMAHSGKAQVEALQPAE
>Mature_478_residues
MEGLDTLILSRIQFAANISFHILFPTITIALGWVLFFFRVRFAQTQDDKWMNMYRFWVKIFALSFAMGVVSGITMSFQFG
TNWPGFMETVGNIAGPLLAYEVLTAFFLEAVFIGIMLFGFSRVPGWLHMLATGLVAFGTTVSAFWIIVLNSWMHTPQGFE
MIDGVAFATDWWAIIFNPSMPYRFAHMWIASGLTVAFLIAGVSAFRWLLGDRSRDVRTALKVGVSIGALLIPVQIFLGDL
HGLNTKEYQPAKVAAMEGLWETGTNVPLILFAIPDEAARENHAEIGIPGLASLILTHSWDGELQGLNDFVAEDGTVLHPP
VAPIFYSFRVMVGTGMAMLALSWFGVFMMWKRRRMHPNPGACHWLAVEGLPKIYLWALVPMAFSGWVATLAGWYTTEIGR
QPWLVQGVMTTEMAVADVPAPMVAGTLVGYLVVYGLLLFAYISVIVYLARKAARGEDGRAINMAHSGKAQVEALQPAE

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=312, Percent_Identity=38.4615384615385, Blast_Score=198, Evalue=6e-52,
Organism=Escherichia coli, GI87081779, Length=505, Percent_Identity=29.1089108910891, Blast_Score=191, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52939; Mature: 52939

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGLDTLILSRIQFAANISFHILFPTITIALGWVLFFFRVRFAQTQDDKWMNMYRFWVKI
CCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FALSFAMGVVSGITMSFQFGTNWPGFMETVGNIAGPLLAYEVLTAFFLEAVFIGIMLFGF
HHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRVPGWLHMLATGLVAFGTTVSAFWIIVLNSWMHTPQGFEMIDGVAFATDWWAIIFNPSM
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEECCCEEEEECCCC
PYRFAHMWIASGLTVAFLIAGVSAFRWLLGDRSRDVRTALKVGVSIGALLIPVQIFLGDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTKEYQPAKVAAMEGLWETGTNVPLILFAIPDEAARENHAEIGIPGLASLILTHSWD
CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHCCCC
GELQGLNDFVAEDGTVLHPPVAPIFYSFRVMVGTGMAMLALSWFGVFMMWKRRRMHPNPG
CCCCCCHHHHHCCCCEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
ACHWLAVEGLPKIYLWALVPMAFSGWVATLAGWYTTEIGRQPWLVQGVMTTEMAVADVPA
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCC
PMVAGTLVGYLVVYGLLLFAYISVIVYLARKAARGEDGRAINMAHSGKAQVEALQPAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MEGLDTLILSRIQFAANISFHILFPTITIALGWVLFFFRVRFAQTQDDKWMNMYRFWVKI
CCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FALSFAMGVVSGITMSFQFGTNWPGFMETVGNIAGPLLAYEVLTAFFLEAVFIGIMLFGF
HHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRVPGWLHMLATGLVAFGTTVSAFWIIVLNSWMHTPQGFEMIDGVAFATDWWAIIFNPSM
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEECCCEEEEECCCC
PYRFAHMWIASGLTVAFLIAGVSAFRWLLGDRSRDVRTALKVGVSIGALLIPVQIFLGDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTKEYQPAKVAAMEGLWETGTNVPLILFAIPDEAARENHAEIGIPGLASLILTHSWD
CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHCCCC
GELQGLNDFVAEDGTVLHPPVAPIFYSFRVMVGTGMAMLALSWFGVFMMWKRRRMHPNPG
CCCCCCHHHHHCCCCEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
ACHWLAVEGLPKIYLWALVPMAFSGWVATLAGWYTTEIGRQPWLVQGVMTTEMAVADVPA
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCC
PMVAGTLVGYLVVYGLLLFAYISVIVYLARKAARGEDGRAINMAHSGKAQVEALQPAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]