| Definition | Ehrlichia chaffeensis str. Arkansas, complete genome. |
|---|---|
| Accession | NC_007799 |
| Length | 1,176,248 |
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The map label for this gene is uvrA [H]
Identifier: 88657960
GI number: 88657960
Start: 799533
End: 802418
Strand: Direct
Name: uvrA [H]
Synonym: ECH_0785
Alternate gene names: 88657960
Gene position: 799533-802418 (Clockwise)
Preceding gene: 88658441
Following gene: 88658152
Centisome position: 67.97
GC content: 30.42
Gene sequence:
>2886_bases ATGACTGATTTGATTAGTATACGTAATGCTAAAGAACATAATCTTCACAACATAAATATAGATCTTCCAAAAAATAAGTT AATTGTAATAACTGGAGTTAGTGGATCTGGAAAATCCAGTCTCGCATTTGATACAATATATGCAGAAGGGCAGCGCAGAT ATGTAGAAAGTCTATCATCCTATGCTCGTCAGTTTTTAGATTCATGTACAAGACCAGAAGTAGAATCAATCACAGGTCTT TCTCCAACTATTGCAATCAGTCAAAAGCTTTTATCGAAAAATTCAAGATCTACTGTATCAACTACTACAGGAATTTATGA TTATTTAAGAATCATGTATTCCAAGATAGGAACACCATATTCCCCAATAACTGGATTACCTATAACAAAACAATCACTTT CTCAAATAGTAGAAACTATCTTGAAATTACCAATAGGAACAAAAATTTCAATTTTAGGTATACTAATAAGAGGGAAACGA GGAGAACATAATAAAGAAATATATGAAATCAAAAAACAGCACTACAAACTATTAAAAATTGATGGTATTACTTATGATAT TAACAATATTCCACAACTAGATAGAAATAAAAAGCATGATATTCATGTAATCATAAATCAGATATCAGTTCTAGAAAATT CTATTGACAATATAACTGAAAACATAAAAACTGCGTTAAAAATAGGTAATGGTATAACTCACATAGAAATACTTGATTTA CCACAAGAATACAAAAGTGACACGTATTACAAGAATCAGGTACTGGTTTTTTCAGAAAATTTTGCATGTCCTGAAACAGA ATTTAGCATAGAAGAAGTAGAACCAAGATTATTTTCATTCAATACATCATATGGATCATGCAAAATTTGTAGTGGAATAG GAAAAAAATATAGCGTTGACAAAAATCTAGTCATAAAAAATGATAATTTATCAATTTCAGAAGGAGCTATACATCCTATA GGCCCAATTGATATAAAAACCATTAATTACAAAATTAATTCGCAATTTAGCTATCATTACTCAAATATTATTTTGTCCTT AGCAAAACATTATAGTTTTGATTTAACAACACCATGGAAAAAATTAGATGATAATATAAAAGATATAATTTTATTTGGCA GCAAAGAAGTACAAATACCTACACATTATCAACACGAAGGATATAAATATTCTAGAAACAAACCATTTGAAGGCATTATA AATATCTTAAATAACAAAGAAGACATAGTTATCGAAAAATTAGCTGAACAATATTCATCTATAAACATATGTAATGAATG CCAAGGATTTCGACTAAGGCAGGAAGCACTATCAGTAAAAATTGACAATAAACATATCGGAGAATTGACAAGGTTATCCG TTATAGACGCAATATCATGGTGTAAAGCACTACCGTCTAGACTCAATGATCAACAGAAGCATATTTCACATAAAATATTA GACGAAATCATTAAAAGACTAATATTTTTAAAAAATGTTGGATTAGGTTATTTAACACTCGATCGTGAATCAGGAACATT ATCTGGAGGAGAAAGTCAAAGAATAAAACTAGCATCACAAATTGGATCCGGATTAACAGGAATAATTTACGTATTAGATG AACCTTCAATCGGGTTACATCAACGTGACAACACGTTATTAATTAATACATTAAAAACATTACGCGATATAGGAAACACA GTCATAGTTGTAGAACATGATGAAGAAACTATCACAAATGCAGATTATGTAGTAGATATAGGTCCAGGAGCAGGACAAAA TGGAGGTTATGTAATTGCAAGTGGTACTCCAAAAGAAATAATGGATAATCATAACAGTATAACTGGCCAATATCTCAGTA ACAAAAAAATAATACCTAACTTCAAAAAGCATAGAACTTTTTACAAATGGATAGAAATCATTGGAGCACATGTAAACAAT TTACAAAACATTGATGTTAAAATTCCTTTACATGCCTTTACTTGCATTACTGGAGTATCTGGAAGTGGAAAATCTAGCTT AATAAACAATACTCTATATCAACATGCAACTGATCAACTAAATAATATTAACTGTATATACAGTAAATGCACATCTATAT CAGGATTAGAACATATAGATAAAGTAATTAAAATAGACCAGTCCCCTATTGGTAGAACCCCTTTATCAAATTCAGCAACA TACACAGGATTATTTACCCATATAAGGTCATGGTTTGCTGAATTACCTTTATCAAAAGAAAGAGGATATACTATAAGCAG GTTTTCATTTAACTCTAAAGGAGGAAGATGTGAAGCATGTAAAGGGGATGGGCAAGTAAAAATAGAAATGCATTTTTTAC CTGATGTATATGTCAAGTGTGAACAATGCAAAGGATCGCGTTATAACAAAGAGACTCTGGAAGTAACACATCAAGGAAAA TCTATAGCTGACATATTAGATATGACAGTTGATCAAGCATACGAATTTTTTATCCATTTACCATTAATCAAAGAAAAATT AGATGCCTTACGCAGCGTAGGCATGGGCTATATTAAAATAGGACAAACATCGAATACATTATCAGGAGGTGAAGCACAAA GAATAAAATTATCAAAAGAACTATCAAAACGTTCAACAGGAAAAACATTGTATATATTAGATGAACCAACTACAGGATTA CATTTTGCAGACATAGATAATTTATTACATGTTCTACATAAATTACGTGATTTAGGTAATACAATAGTAGTAATAGAACA TAATTTACATGTCATCAAAACAGCAGAATACATAATAGATATAGGTCCTAACGGAGGAGATGATGGAGGTCAAGTAGTAG CTACTGGGACTCCTGAAGAAATAGTTCAAAACCCTCATAGCATAACTGGACAATACTTAAAGCCTTATTTAAATGCCCAA TCATAA
Upstream 100 bases:
>100_bases ATTATTATTGAATTACCAAAATTAACTGGAAAATTGTTAATCTTCATATATCATTAATAGTCCTACTCTGTTACTCACTA ATTAATGTGGTAAACTAAAT
Downstream 100 bases:
>100_bases AGCTATACATAAAAAAGCATATTATAAATTAATATACTTTTACTTAGCATACGCATACACACACATCATTTACCAAGAAG AGTAGATGTAAGCTAATATT
Product: excinuclease ABC, A subunit
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 961; Mature: 960
Protein sequence:
>961_residues MTDLISIRNAKEHNLHNINIDLPKNKLIVITGVSGSGKSSLAFDTIYAEGQRRYVESLSSYARQFLDSCTRPEVESITGL SPTIAISQKLLSKNSRSTVSTTTGIYDYLRIMYSKIGTPYSPITGLPITKQSLSQIVETILKLPIGTKISILGILIRGKR GEHNKEIYEIKKQHYKLLKIDGITYDINNIPQLDRNKKHDIHVIINQISVLENSIDNITENIKTALKIGNGITHIEILDL PQEYKSDTYYKNQVLVFSENFACPETEFSIEEVEPRLFSFNTSYGSCKICSGIGKKYSVDKNLVIKNDNLSISEGAIHPI GPIDIKTINYKINSQFSYHYSNIILSLAKHYSFDLTTPWKKLDDNIKDIILFGSKEVQIPTHYQHEGYKYSRNKPFEGII NILNNKEDIVIEKLAEQYSSINICNECQGFRLRQEALSVKIDNKHIGELTRLSVIDAISWCKALPSRLNDQQKHISHKIL DEIIKRLIFLKNVGLGYLTLDRESGTLSGGESQRIKLASQIGSGLTGIIYVLDEPSIGLHQRDNTLLINTLKTLRDIGNT VIVVEHDEETITNADYVVDIGPGAGQNGGYVIASGTPKEIMDNHNSITGQYLSNKKIIPNFKKHRTFYKWIEIIGAHVNN LQNIDVKIPLHAFTCITGVSGSGKSSLINNTLYQHATDQLNNINCIYSKCTSISGLEHIDKVIKIDQSPIGRTPLSNSAT YTGLFTHIRSWFAELPLSKERGYTISRFSFNSKGGRCEACKGDGQVKIEMHFLPDVYVKCEQCKGSRYNKETLEVTHQGK SIADILDMTVDQAYEFFIHLPLIKEKLDALRSVGMGYIKIGQTSNTLSGGEAQRIKLSKELSKRSTGKTLYILDEPTTGL HFADIDNLLHVLHKLRDLGNTIVVIEHNLHVIKTAEYIIDIGPNGGDDGGQVVATGTPEEIVQNPHSITGQYLKPYLNAQ S
Sequences:
>Translated_961_residues MTDLISIRNAKEHNLHNINIDLPKNKLIVITGVSGSGKSSLAFDTIYAEGQRRYVESLSSYARQFLDSCTRPEVESITGL SPTIAISQKLLSKNSRSTVSTTTGIYDYLRIMYSKIGTPYSPITGLPITKQSLSQIVETILKLPIGTKISILGILIRGKR GEHNKEIYEIKKQHYKLLKIDGITYDINNIPQLDRNKKHDIHVIINQISVLENSIDNITENIKTALKIGNGITHIEILDL PQEYKSDTYYKNQVLVFSENFACPETEFSIEEVEPRLFSFNTSYGSCKICSGIGKKYSVDKNLVIKNDNLSISEGAIHPI GPIDIKTINYKINSQFSYHYSNIILSLAKHYSFDLTTPWKKLDDNIKDIILFGSKEVQIPTHYQHEGYKYSRNKPFEGII NILNNKEDIVIEKLAEQYSSINICNECQGFRLRQEALSVKIDNKHIGELTRLSVIDAISWCKALPSRLNDQQKHISHKIL DEIIKRLIFLKNVGLGYLTLDRESGTLSGGESQRIKLASQIGSGLTGIIYVLDEPSIGLHQRDNTLLINTLKTLRDIGNT VIVVEHDEETITNADYVVDIGPGAGQNGGYVIASGTPKEIMDNHNSITGQYLSNKKIIPNFKKHRTFYKWIEIIGAHVNN LQNIDVKIPLHAFTCITGVSGSGKSSLINNTLYQHATDQLNNINCIYSKCTSISGLEHIDKVIKIDQSPIGRTPLSNSAT YTGLFTHIRSWFAELPLSKERGYTISRFSFNSKGGRCEACKGDGQVKIEMHFLPDVYVKCEQCKGSRYNKETLEVTHQGK SIADILDMTVDQAYEFFIHLPLIKEKLDALRSVGMGYIKIGQTSNTLSGGEAQRIKLSKELSKRSTGKTLYILDEPTTGL HFADIDNLLHVLHKLRDLGNTIVVIEHNLHVIKTAEYIIDIGPNGGDDGGQVVATGTPEEIVQNPHSITGQYLKPYLNAQ S >Mature_960_residues TDLISIRNAKEHNLHNINIDLPKNKLIVITGVSGSGKSSLAFDTIYAEGQRRYVESLSSYARQFLDSCTRPEVESITGLS PTIAISQKLLSKNSRSTVSTTTGIYDYLRIMYSKIGTPYSPITGLPITKQSLSQIVETILKLPIGTKISILGILIRGKRG EHNKEIYEIKKQHYKLLKIDGITYDINNIPQLDRNKKHDIHVIINQISVLENSIDNITENIKTALKIGNGITHIEILDLP QEYKSDTYYKNQVLVFSENFACPETEFSIEEVEPRLFSFNTSYGSCKICSGIGKKYSVDKNLVIKNDNLSISEGAIHPIG PIDIKTINYKINSQFSYHYSNIILSLAKHYSFDLTTPWKKLDDNIKDIILFGSKEVQIPTHYQHEGYKYSRNKPFEGIIN ILNNKEDIVIEKLAEQYSSINICNECQGFRLRQEALSVKIDNKHIGELTRLSVIDAISWCKALPSRLNDQQKHISHKILD EIIKRLIFLKNVGLGYLTLDRESGTLSGGESQRIKLASQIGSGLTGIIYVLDEPSIGLHQRDNTLLINTLKTLRDIGNTV IVVEHDEETITNADYVVDIGPGAGQNGGYVIASGTPKEIMDNHNSITGQYLSNKKIIPNFKKHRTFYKWIEIIGAHVNNL QNIDVKIPLHAFTCITGVSGSGKSSLINNTLYQHATDQLNNINCIYSKCTSISGLEHIDKVIKIDQSPIGRTPLSNSATY TGLFTHIRSWFAELPLSKERGYTISRFSFNSKGGRCEACKGDGQVKIEMHFLPDVYVKCEQCKGSRYNKETLEVTHQGKS IADILDMTVDQAYEFFIHLPLIKEKLDALRSVGMGYIKIGQTSNTLSGGEAQRIKLSKELSKRSTGKTLYILDEPTTGLH FADIDNLLHVLHKLRDLGNTIVVIEHNLHVIKTAEYIIDIGPNGGDDGGQVVATGTPEEIVQNPHSITGQYLKPYLNAQS
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=964, Percent_Identity=50.207468879668, Blast_Score=944, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 107523; Mature: 107392
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLISIRNAKEHNLHNINIDLPKNKLIVITGVSGSGKSSLAFDTIYAEGQRRYVESLSS CCCCEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHH YARQFLDSCTRPEVESITGLSPTIAISQKLLSKNSRSTVSTTTGIYDYLRIMYSKIGTPY HHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCC SPITGLPITKQSLSQIVETILKLPIGTKISILGILIRGKRGEHNKEIYEIKKQHYKLLKI CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHCEEEEEE DGITYDINNIPQLDRNKKHDIHVIINQISVLENSIDNITENIKTALKIGNGITHIEILDL CCEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC PQEYKSDTYYKNQVLVFSENFACPETEFSIEEVEPRLFSFNTSYGSCKICSGIGKKYSVD CHHHCCCCEECCEEEEEECCCCCCCCCCCHHHCCCEEEEEECCCCCEEEHHCCCCCEECC KNLVIKNDNLSISEGAIHPIGPIDIKTINYKINSQFSYHYSNIILSLAKHYSFDLTTPWK CCEEEECCCCEECCCCCCCCCCEEEEEEEEEECCEEEHHHHHHHHHHHHHCCCCCCCCHH KLDDNIKDIILFGSKEVQIPTHYQHEGYKYSRNKPFEGIINILNNKEDIVIEKLAEQYSS HHCCCCEEEEEECCCEEECCCCCCCCCEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC INICNECQGFRLRQEALSVKIDNKHIGELTRLSVIDAISWCKALPSRLNDQQKHISHKIL CCHHHHCCCCEEEHHHHEEEECCCHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH DEIIKRLIFLKNVGLGYLTLDRESGTLSGGESQRIKLASQIGSGLTGIIYVLDEPSIGLH HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHEEEHHHHCCCCEEEEEEECCCCCCCC QRDNTLLINTLKTLRDIGNTVIVVEHDEETITNADYVVDIGPGAGQNGGYVIASGTPKEI CCCCEEEHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCEEEECCCCHHH MDNHNSITGQYLSNKKIIPNFKKHRTFYKWIEIIGAHVNNLQNIDVKIPLHAFTCITGVS HCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHEEEEEEECCC GSGKSSLINNTLYQHATDQLNNINCIYSKCTSISGLEHIDKVIKIDQSPIGRTPLSNSAT CCCCHHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC YTGLFTHIRSWFAELPLSKERGYTISRFSFNSKGGRCEACKGDGQVKIEMHFLPDVYVKC HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEEECCCCCEEE EQCKGSRYNKETLEVTHQGKSIADILDMTVDQAYEFFIHLPLIKEKLDALRSVGMGYIKI HHCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHCCCCEEEE GQTSNTLSGGEAQRIKLSKELSKRSTGKTLYILDEPTTGLHFADIDNLLHVLHKLRDLGN CCCCCCCCCCCHHEEEHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCC TIVVIEHNLHVIKTAEYIIDIGPNGGDDGGQVVATGTPEEIVQNPHSITGQYLKPYLNAQ EEEEEECCEEEEEEEEEEEEECCCCCCCCCEEEECCCHHHHHCCCCCCCHHHHHHHCCCC S C >Mature Secondary Structure TDLISIRNAKEHNLHNINIDLPKNKLIVITGVSGSGKSSLAFDTIYAEGQRRYVESLSS CCCEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHH YARQFLDSCTRPEVESITGLSPTIAISQKLLSKNSRSTVSTTTGIYDYLRIMYSKIGTPY HHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCC SPITGLPITKQSLSQIVETILKLPIGTKISILGILIRGKRGEHNKEIYEIKKQHYKLLKI CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHCEEEEEE DGITYDINNIPQLDRNKKHDIHVIINQISVLENSIDNITENIKTALKIGNGITHIEILDL CCEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC PQEYKSDTYYKNQVLVFSENFACPETEFSIEEVEPRLFSFNTSYGSCKICSGIGKKYSVD CHHHCCCCEECCEEEEEECCCCCCCCCCCHHHCCCEEEEEECCCCCEEEHHCCCCCEECC KNLVIKNDNLSISEGAIHPIGPIDIKTINYKINSQFSYHYSNIILSLAKHYSFDLTTPWK CCEEEECCCCEECCCCCCCCCCEEEEEEEEEECCEEEHHHHHHHHHHHHHCCCCCCCCHH KLDDNIKDIILFGSKEVQIPTHYQHEGYKYSRNKPFEGIINILNNKEDIVIEKLAEQYSS HHCCCCEEEEEECCCEEECCCCCCCCCEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC INICNECQGFRLRQEALSVKIDNKHIGELTRLSVIDAISWCKALPSRLNDQQKHISHKIL CCHHHHCCCCEEEHHHHEEEECCCHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH DEIIKRLIFLKNVGLGYLTLDRESGTLSGGESQRIKLASQIGSGLTGIIYVLDEPSIGLH HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHEEEHHHHCCCCEEEEEEECCCCCCCC QRDNTLLINTLKTLRDIGNTVIVVEHDEETITNADYVVDIGPGAGQNGGYVIASGTPKEI CCCCEEEHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCEEEECCCCHHH MDNHNSITGQYLSNKKIIPNFKKHRTFYKWIEIIGAHVNNLQNIDVKIPLHAFTCITGVS HCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHEEEEEEECCC GSGKSSLINNTLYQHATDQLNNINCIYSKCTSISGLEHIDKVIKIDQSPIGRTPLSNSAT CCCCHHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC YTGLFTHIRSWFAELPLSKERGYTISRFSFNSKGGRCEACKGDGQVKIEMHFLPDVYVKC HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEEECCCCCEEE EQCKGSRYNKETLEVTHQGKSIADILDMTVDQAYEFFIHLPLIKEKLDALRSVGMGYIKI HHCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHCCCCEEEE GQTSNTLSGGEAQRIKLSKELSKRSTGKTLYILDEPTTGLHFADIDNLLHVLHKLRDLGN CCCCCCCCCCCHHEEEHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCC TIVVIEHNLHVIKTAEYIIDIGPNGGDDGGQVVATGTPEEIVQNPHSITGQYLKPYLNAQ EEEEEECCEEEEEEEEEEEEECCCCCCCCCEEEECCCHHHHHCCCCCCCHHHHHHHCCCC S C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]