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The map label for this gene is ydaL [C]

Identifier: 88657922

GI number: 88657922

Start: 813200

End: 813769

Strand: Direct

Name: ydaL [C]

Synonym: ECH_0797

Alternate gene names: 88657922

Gene position: 813200-813769 (Clockwise)

Preceding gene: 88658402

Following gene: 88658541

Centisome position: 69.14

GC content: 29.65

Gene sequence:

>570_bases
ATGTTTAAAAAATTAGATAAAAGTACATCAGATTGCTCTCTACATGATGATACATCACTATGGGCCTCCATTACCCTAAC
GGCCACTCCAATTTATACTAATAAGGTCCCATATACAAAAATCAGAAAAATTAATAATAATCTTAATACTTCACTAAATA
ACAAGTATACTAATCATTATACACCACCAATATACACAAAACCAAATAGTACACATGATATTAGCAGTGGTTCAAATCTC
AATAACAATACTAAGAAGAAAATCGATCAAGGAAAATACCATATAGACTCCATCCTTGATCTGCACGGGTACACCTTAGA
TGCTGCTTATAACACATTAATGAATTTCATAATTAAAAATTATAACTCAGCAAACAAACTCTTACTAATCATTACAGGAT
GGGGAAGTACTGATAAGTATAATAGTAACAGTATAAAAAGTAATTTTAGCAAGTGGCTACAAAGCGTACAAATAGCAAAT
TTAATATTATACTATAGAGAAGCTAATCGCATACATGGAGGAAAAGGAGCATTTTATGTACTATTAAAGAGCAAAAATAA
AAAGATTTAA

Upstream 100 bases:

>100_bases
TCTTAGTAGAACACTACTACTTGTATTACTAGTATATATACTTGTTACATTTTGTTTATGAACTTTTAGCTTTATATAGG
CGCAAAAACTGGTTATCTAT

Downstream 100 bases:

>100_bases
TATATAAATACTAGTAACATATACAACTAATTAGATTGATTTAAAGTTTAAATTTTTACAAATATAGACATTATATTAAA
ACAAAATATACTATGTATTT

Product: Smr domain-containing protein

Products: NA

Alternate protein names: Smr Domain Protein; Smr/MutS Family Protein; Smr Protein/MutS2 C-Terminal; Smr Domain Family Protein

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MFKKLDKSTSDCSLHDDTSLWASITLTATPIYTNKVPYTKIRKINNNLNTSLNNKYTNHYTPPIYTKPNSTHDISSGSNL
NNNTKKKIDQGKYHIDSILDLHGYTLDAAYNTLMNFIIKNYNSANKLLLIITGWGSTDKYNSNSIKSNFSKWLQSVQIAN
LILYYREANRIHGGKGAFYVLLKSKNKKI

Sequences:

>Translated_189_residues
MFKKLDKSTSDCSLHDDTSLWASITLTATPIYTNKVPYTKIRKINNNLNTSLNNKYTNHYTPPIYTKPNSTHDISSGSNL
NNNTKKKIDQGKYHIDSILDLHGYTLDAAYNTLMNFIIKNYNSANKLLLIITGWGSTDKYNSNSIKSNFSKWLQSVQIAN
LILYYREANRIHGGKGAFYVLLKSKNKKI
>Mature_189_residues
MFKKLDKSTSDCSLHDDTSLWASITLTATPIYTNKVPYTKIRKINNNLNTSLNNKYTNHYTPPIYTKPNSTHDISSGSNL
NNNTKKKIDQGKYHIDSILDLHGYTLDAAYNTLMNFIIKNYNSANKLLLIITGWGSTDKYNSNSIKSNFSKWLQSVQIAN
LILYYREANRIHGGKGAFYVLLKSKNKKI

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21535; Mature: 21535

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKLDKSTSDCSLHDDTSLWASITLTATPIYTNKVPYTKIRKINNNLNTSLNNKYTNHY
CCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEECCCCHHHHHHHCCCCCCCCCCCCCCCC
TPPIYTKPNSTHDISSGSNLNNNTKKKIDQGKYHIDSILDLHGYTLDAAYNTLMNFIIKN
CCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCEEHHHHHHHHHHHHHHC
YNSANKLLLIITGWGSTDKYNSNSIKSNFSKWLQSVQIANLILYYREANRIHGGKGAFYV
CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEE
LLKSKNKKI
EEECCCCCC
>Mature Secondary Structure
MFKKLDKSTSDCSLHDDTSLWASITLTATPIYTNKVPYTKIRKINNNLNTSLNNKYTNHY
CCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEECCCCHHHHHHHCCCCCCCCCCCCCCCC
TPPIYTKPNSTHDISSGSNLNNNTKKKIDQGKYHIDSILDLHGYTLDAAYNTLMNFIIKN
CCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCEEHHHHHHHHHHHHHHC
YNSANKLLLIITGWGSTDKYNSNSIKSNFSKWLQSVQIANLILYYREANRIHGGKGAFYV
CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEE
LLKSKNKKI
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA