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The map label for this gene is rpoZ

Identifier: 88658402

GI number: 88658402

Start: 812689

End: 813105

Strand: Direct

Name: rpoZ

Synonym: ECH_0796

Alternate gene names: 88658402

Gene position: 812689-813105 (Clockwise)

Preceding gene: 88657731

Following gene: 88657922

Centisome position: 69.09

GC content: 32.85

Gene sequence:

>417_bases
ATGGCACGTCTTACAGTTGAAGAATGTATGGGTCGTACTAATAATAAGTTTAAGCTAGTGATATTAGCAAGTCAGAGAGC
CCATGATCTAAATTCTGGAGCATGTCCAGTAATAAAATACAAAAATGGTAAAAATACTGTTATTGCATTAAAAGAAATAG
CAGCAAAACAATTAGACGTATCCTCTTTATTTAATTTGTCAGTACAAAGATGTCGAAAATATATGGAGAAATTTATCAAT
TCAGATGAACCATATATTGCTCATAAACCAAAAAACAATGTCGATATCTTTCAAGCGAGTGCAGTAGCTGGTAACTCTGA
TGGATTGGAAAATAGCTCAAATAGTCGGGATGATAACCCATTAGGTAGGGATAATTTTTTTTCTACCCCAGAAAACAGAA
ACAATACAAATTCTTAG

Upstream 100 bases:

>100_bases
ATAATACAAAAAGAAGATTAATTAGAGATTTTTAGATTGCTCTATTGCATAATTTTCTACATATGCTAGAATAAAGCTTT
CATTCATATTTGGTTTGTTA

Downstream 100 bases:

>100_bases
TAGAACACTACTACTTGTATTACTAGTATATATACTTGTTACATTTTGTTTATGAACTTTTAGCTTTATATAGGCGCAAA
AACTGGTTATCTATATGTTT

Product: DNA-directed RNA polymerase, omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MARLTVEECMGRTNNKFKLVILASQRAHDLNSGACPVIKYKNGKNTVIALKEIAAKQLDVSSLFNLSVQRCRKYMEKFIN
SDEPYIAHKPKNNVDIFQASAVAGNSDGLENSSNSRDDNPLGRDNFFSTPENRNNTNS

Sequences:

>Translated_138_residues
MARLTVEECMGRTNNKFKLVILASQRAHDLNSGACPVIKYKNGKNTVIALKEIAAKQLDVSSLFNLSVQRCRKYMEKFIN
SDEPYIAHKPKNNVDIFQASAVAGNSDGLENSSNSRDDNPLGRDNFFSTPENRNNTNS
>Mature_137_residues
ARLTVEECMGRTNNKFKLVILASQRAHDLNSGACPVIKYKNGKNTVIALKEIAAKQLDVSSLFNLSVQRCRKYMEKFINS
DEPYIAHKPKNNVDIFQASAVAGNSDGLENSSNSRDDNPLGRDNFFSTPENRNNTNS

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_EHRCR (Q2GG39)

Other databases:

- EMBL:   CP000236
- RefSeq:   YP_507594.1
- STRING:   Q2GG39
- GeneID:   3927848
- GenomeReviews:   CP000236_GR
- KEGG:   ech:ECH_0796
- TIGR:   ECH_0796
- eggNOG:   COG1758
- HOGENOM:   HBG750946
- OMA:   YMEKFIN
- ProtClustDB:   PRK00392
- BioCyc:   ECHA205920:ECH_0796-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 15382; Mature: 15251

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLTVEECMGRTNNKFKLVILASQRAHDLNSGACPVIKYKNGKNTVIALKEIAAKQLDV
CCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEHHHHHHHHCCH
SSLFNLSVQRCRKYMEKFINSDEPYIAHKPKNNVDIFQASAVAGNSDGLENSSNSRDDNP
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
LGRDNFFSTPENRNNTNS
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARLTVEECMGRTNNKFKLVILASQRAHDLNSGACPVIKYKNGKNTVIALKEIAAKQLDV
CCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEHHHHHHHHCCH
SSLFNLSVQRCRKYMEKFINSDEPYIAHKPKNNVDIFQASAVAGNSDGLENSSNSRDDNP
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
LGRDNFFSTPENRNNTNS
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA