| Definition | Ehrlichia chaffeensis str. Arkansas, complete genome. |
|---|---|
| Accession | NC_007799 |
| Length | 1,176,248 |
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The map label for this gene is gyrA [H]
Identifier: 88657796
GI number: 88657796
Start: 878326
End: 881022
Strand: Reverse
Name: gyrA [H]
Synonym: ECH_0858
Alternate gene names: 88657796
Gene position: 881022-878326 (Counterclockwise)
Preceding gene: 88657905
Following gene: 88658370
Centisome position: 74.9
GC content: 33.78
Gene sequence:
>2697_bases ATGAGTGATGTCAATAATGTCATACCGGTTTCTATAGAACAAGAATTAGAAGATTCTTACTTATCTTACGCAATGAGCGT TATAGTTAGTAGGGCGATTCCTGATATACGAGATGGATTAAAACCTGTGCATAGAAGGATTTTGTATTCTATGTATAAGT CTGGTTATGATTATGGTAAGCCGTATAAAAAAGCAGCACGTGTTGTTGGTGATGTTATGGGGAAATATCATCCTCATGCA GATGCGGCAATTTATGATTCATTAGTAAGAATGGCGCAGGATTTTTCTTTGCTATTGCCGTTAATTGATAGTCAGGGTAA TTTTGGTTCAATAGATGGTGATCCTCCAGCTTCTATGCGTTATACAGAAGCTAGATTGGCGAAGGCAGCACATTTTTTAT TAAATGACATAGATGAAGATACTGTAGATTTTCGGCCTAATTATGATGAGAATGAAGTAGAGCCTGTAGTATTACCAGCA GAATTTCCTAATATACTGGTTAATGGAGCTGGTGGTGTTGCTGTTGGTATGTCAACCAATATTCCTTCTCACAATTTAGG GGAAGTAATAGATGCTTGTATAGCTTACATAGATAATCCTGAAATTACTTTTGATGAGTTAATTAATATAGTTCGTGGTC CTGATTTTCCTACTGGTGGTACTATTTTAGGGGATGCTGGTATACGTTCTGCATTTATGACAGGTAAAGGAACAATTATT ATTCAGGGGAAAACTCATTTAGAAGATTTACCGTCTGGAAAGCAAGCAATAATTATTGATGAAATTCCTTATCAGGTAAA TAAGGCAAAACTTATTGAGCGTATCCATGAACTGATCAAAGAAAAAAAGATAGAAGGGATATTAGATTTACGAGATGAAT CTAACAAAATGGGGATACGAGTTGCAATTGAATTAAAGAAACAGGTGTCTCATCAGGTTATCTTAAATCAAATTTTAGGA TTAACTCCATTGAGAACGAGCTTTAGTATTAATACGCTTGTATTAGATAATAATAAACCAAAAGTGATGTCTTTACCAGA CATTATATCTACGTTTGTTGAGTATAGAAAGGAAGTTTTAACACGTCGTACCCAGTTTAGATTAAGAAAGGTTCGGGAAA GAGCTCATTTATATATAGGCATGTACATTGCTGTGTTAAATATTGACAAAGTTATTGCTATTATTAGATCATCTCGTGAC ACAGCAGAGGCTACTAAGCGGTTACTTGAATGTAAGTGGGATGCTCTAACATCTGTTAGAGAGATGATAGAACTTGTTGC CGATAGTAAAAGCATTGTCATTGACAATGTATGTCAATTAACAGGTGTACAAGTAAAATCGATACTGGAAATGAAATTAC AGCGTCTCACAAACCTGGAAAAGGAAAAATTGGAACTTGACTTAAAGTCAATGGTATCGATGATTAAACAGTATACTGAG CTTCTTAAAAACAAAGAGTCTTTATTACAATTGATTAAGGATGGGTTTAAAGAGATTAAAGCAAAATTAGCTGTTCCTAG GAGAACTACTATAGATTATTCACATTTTGAGACCGATATTGAAGATCTTATACCAAAAGAAGATATGGTAGTTACTGTCA CTATGAGTGGTTATATTAAACGTGCTAAGCTTTCAAATTATCGAGCTCAGAAAAGAGGTGGAAAGGGGAGAATAGGACAG GCTATTAAGGAAGAAGATGTAATAACTAATCTTTTTGTAGTTAATACTCATACTAGTGTATTGTTCTTTTCTAATATTGG TAGAGTATATAAGTTGAAGGTTTATAAGCTTCCATTAGGTGAACCTACATCACGTGGAAGATCATTAGTAAATATTTTTC CGCTGAGTGAGAATGAATCTATAACTAGTGTTATGCCTTTACCTGATAATGTAGAAGATGCGGAAATATTGAATATTGTT TTTGCAACTGCATCAGGTAATTTAAGACGTAATGCACTTTCAGATTTTCAATATGTACCTAGTAACGGTAAAATAGCTAT GGTACTTGATACAGGAGATACTTTGATATCTGTGAAGGTATGTAAGGAAGAGGATCATGTTTTATTGTCTACAAGGTTAG GGAAAAGTATTAGGTTTTCTGTAAGTAATGTTCGTCAGTTTAAGGGCAGAATGTCTGATGGGGTAAGAGCTATTAAGCTA TCTTCAGATGATAATGTCATTTCTATGTCTGTATTGCTAGCTATGGATATAGATTCTGAGAAAAAGGATCTGTATTTAAA AGTTCCTTTAGACAAGCGTATGTGTGTTAAAGAGGAAGGTGTTGTTAATGGAGGTATAGCTAAGATATTATGTGATCTTG GATTAGAACAAGACATATTTGTTACTATGGTACAAAATGAACAATTTATTTTAACAGTAACTGAAAATGGCTTTGGAAAA AGAACTTCTGCATATGAATATCGCACTACTTTGAGAGGGGGAGTAGGTGTTGTTAATATTTTGACAACTGCAAGGAATGG CAATGTGGTAGCTAGTTTTCCTGTAGAATCTAATGATCATATAATGTTAATTACAGATAAAGGTAAGCTAATTCGTATTG CTGTAAGTGATATCAGAATTATTGGTAGAAGTACTCAAGGTGTTACTTTATTTAAGACTGAGAAACGTGAAAAAGTTGTT TCAGTAGCAAAGATAATTGATGCTAAGGATAATTCTGATATTGATGGTAATATATAA
Upstream 100 bases:
>100_bases AGCAATGTTAGTTGGTTGTTTTTGGAAACAATTACTTGACCTTGATGTGCTTGGGAATTAAGATGTGTGATATATTTTAA GGTTAGTTAATAAGTATTAG
Downstream 100 bases:
>100_bases GTTGTGTATGCAGATTAATGAATCGAAGGAATATAAATTTACTCTTTACTAAATTTAAGGAGCATAATCCTCACCCCAGA ATAGAACTGAAGTATACTAA
Product: DNA gyrase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 898; Mature: 897
Protein sequence:
>898_residues MSDVNNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKAARVVGDVMGKYHPHA DAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARLAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPA EFPNILVNGAGGVAVGMSTNIPSHNLGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTII IQGKTHLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAIELKKQVSHQVILNQILG LTPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVLTRRTQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRD TAEATKRLLECKWDALTSVREMIELVADSKSIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTE LLKNKESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKEDMVVTVTMSGYIKRAKLSNYRAQKRGGKGRIGQ AIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGEPTSRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIV FATASGNLRRNALSDFQYVPSNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKL SSDDNVISMSVLLAMDIDSEKKDLYLKVPLDKRMCVKEEGVVNGGIAKILCDLGLEQDIFVTMVQNEQFILTVTENGFGK RTSAYEYRTTLRGGVGVVNILTTARNGNVVASFPVESNDHIMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVV SVAKIIDAKDNSDIDGNI
Sequences:
>Translated_898_residues MSDVNNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKAARVVGDVMGKYHPHA DAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARLAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPA EFPNILVNGAGGVAVGMSTNIPSHNLGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTII IQGKTHLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAIELKKQVSHQVILNQILG LTPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVLTRRTQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRD TAEATKRLLECKWDALTSVREMIELVADSKSIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTE LLKNKESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKEDMVVTVTMSGYIKRAKLSNYRAQKRGGKGRIGQ AIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGEPTSRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIV FATASGNLRRNALSDFQYVPSNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKL SSDDNVISMSVLLAMDIDSEKKDLYLKVPLDKRMCVKEEGVVNGGIAKILCDLGLEQDIFVTMVQNEQFILTVTENGFGK RTSAYEYRTTLRGGVGVVNILTTARNGNVVASFPVESNDHIMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVV SVAKIIDAKDNSDIDGNI >Mature_897_residues SDVNNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKAARVVGDVMGKYHPHAD AAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARLAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAE FPNILVNGAGGVAVGMSTNIPSHNLGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIII QGKTHLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAIELKKQVSHQVILNQILGL TPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVLTRRTQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDT AEATKRLLECKWDALTSVREMIELVADSKSIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTEL LKNKESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKEDMVVTVTMSGYIKRAKLSNYRAQKRGGKGRIGQA IKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGEPTSRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVF ATASGNLRRNALSDFQYVPSNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKLS SDDNVISMSVLLAMDIDSEKKDLYLKVPLDKRMCVKEEGVVNGGIAKILCDLGLEQDIFVTMVQNEQFILTVTENGFGKR TSAYEYRTTLRGGVGVVNILTTARNGNVVASFPVESNDHIMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVVS VAKIIDAKDNSDIDGNI
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=178, Percent_Identity=33.1460674157303, Blast_Score=83, Evalue=2e-15, Organism=Homo sapiens, GI19913408, Length=172, Percent_Identity=31.9767441860465, Blast_Score=79, Evalue=2e-14, Organism=Escherichia coli, GI1788562, Length=906, Percent_Identity=44.8123620309051, Blast_Score=765, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=726, Percent_Identity=31.9559228650138, Blast_Score=353, Evalue=2e-98, Organism=Caenorhabditis elegans, GI212645845, Length=465, Percent_Identity=24.0860215053763, Blast_Score=89, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17535065, Length=171, Percent_Identity=33.9181286549708, Blast_Score=84, Evalue=3e-16, Organism=Caenorhabditis elegans, GI212645657, Length=170, Percent_Identity=34.1176470588235, Blast_Score=84, Evalue=3e-16, Organism=Caenorhabditis elegans, GI115534553, Length=163, Percent_Identity=30.6748466257669, Blast_Score=74, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6324241, Length=168, Percent_Identity=32.1428571428571, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI17136538, Length=350, Percent_Identity=22.8571428571429, Blast_Score=81, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 100220; Mature: 100089
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVNNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGK CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC PYKKAARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMR CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC YTEARLAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTN HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCEEEEEECC IPSHNLGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTII CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCHHHEECCCCEEE IQGKTHLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIR EECCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEE VAIELKKQVSHQVILNQILGLTPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVL EEEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEECHHHHHHHHHHHHHHH TRRTQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVR HHHHHHHHHHHHHHHHHHEEHHHEEHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH EMIELVADSKSIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTE HHHHHHHCCCCEEEHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LLKNKESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKEDMVVTVTMSGYIK HHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHCCCCCEEEEEEECCHHH RAKLSNYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLG HHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEEEECCCEEEEEECCCCEEEEEEEEECCC EPTSRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVFATASGNLRRNALSDFQYVP CCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHCCCEECC SNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKL CCCCEEEEEECCCEEEEEEEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHCCCEEEEEE SSDDNVISMSVLLAMDIDSEKKDLYLKVPLDKRMCVKEEGVVNGGIAKILCDLGLEQDIF CCCCCEEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEE VTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARNGNVVASFPVESNDH EEEEECCEEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCE IMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVVSVAKIIDAKDNSDIDGNI EEEEECCCCEEEEEEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SDVNNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGK CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC PYKKAARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMR CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC YTEARLAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTN HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCEEEEEECC IPSHNLGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTII CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCHHHEECCCCEEE IQGKTHLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIR EECCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEE VAIELKKQVSHQVILNQILGLTPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVL EEEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEECHHHHHHHHHHHHHHH TRRTQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVR HHHHHHHHHHHHHHHHHHEEHHHEEHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH EMIELVADSKSIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTE HHHHHHHCCCCEEEHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LLKNKESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKEDMVVTVTMSGYIK HHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHCCCCCEEEEEEECCHHH RAKLSNYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLG HHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEEEECCCEEEEEECCCCEEEEEEEEECCC EPTSRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVFATASGNLRRNALSDFQYVP CCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHCCCEECC SNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKL CCCCEEEEEECCCEEEEEEEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHCCCEEEEEE SSDDNVISMSVLLAMDIDSEKKDLYLKVPLDKRMCVKEEGVVNGGIAKILCDLGLEQDIF CCCCCEEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEE VTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARNGNVVASFPVESNDH EEEEECCEEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCE IMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVVSVAKIIDAKDNSDIDGNI EEEEECCCCEEEEEEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA