Click here to switch to the map view.

The map label for this gene is psd

Identifier: 88657717

GI number: 88657717

Start: 793322

End: 794002

Strand: Direct

Name: psd

Synonym: ECH_0779

Alternate gene names: 88657717

Gene position: 793322-794002 (Clockwise)

Preceding gene: 88658458

Following gene: 88658585

Centisome position: 67.45

GC content: 31.72

Gene sequence:

>681_bases
ATGCTTTATAATTTTATTCATAATATCCATAAAGAGGGATATATATTTATAATGATATCATTTCTTGCGTCTTGCATTGG
ATTTGCTATTTCTTGTAGCTTAGGAATAATTTGTTTAGTCATATCATTGCTATGTATATATTTTTTCCGTGATCCTATAC
GTATGGTGCCAGAAGGAGATGATCTCATTACTAGTCCAGCTGATGGGTTAATATTAGATATTAAAGAAGTGAACTCTCCT
ATAGATGATTCTACACAAGTAGTATGCATTAGTATTTTTCTAAATGTGTTGAACGTTCATGTCAATAGAATTCCTGTTTC
TGGAACTATTAAGGCTACAGAGTACATACCAGGGAGGTTCATATCAGCTTCACTAAATAAATCAAGCGAATTAAACGAGA
GACAAAGATTAATTATTGAATCCAAAATTGACAACCGTTCAATTATTGTAGATCAAATCGCAGGATTAATAGCACGACGC
ATAGTATGCAACGTTTCTGAAGGTCAACAAGTTAATTCTGGAGAAAGATTTGGTATTATTAGGTTTGGTAGTCGAGTTAA
TTTATATCTACCATTAAATACTCACATATCAGTGTTTAAGGGACAAACAGTAATAGGTGGAGAAACTATTTTAGCATATT
TACAAGACGCTCCTAAACAATTAACAGTTAAGTCTATATAA

Upstream 100 bases:

>100_bases
AAATTGCAACAATATTTCCCAAATTATATAAATTTATCAAATATTAATTGCATAAAATACTGCAAAGTTTATAATCCTTC
AAAAAGTCTGGGGTTGAGTA

Downstream 100 bases:

>100_bases
TAATATGAAAGAGGAGCAGAGTAGCAAATTTTTTCCTATTACTAGGTTATTTCCTAATATAGTAACCCTATTAGGTTTAT
GTGCTGGCCTGACTTCTATA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MLYNFIHNIHKEGYIFIMISFLASCIGFAISCSLGIICLVISLLCIYFFRDPIRMVPEGDDLITSPADGLILDIKEVNSP
IDDSTQVVCISIFLNVLNVHVNRIPVSGTIKATEYIPGRFISASLNKSSELNERQRLIIESKIDNRSIIVDQIAGLIARR
IVCNVSEGQQVNSGERFGIIRFGSRVNLYLPLNTHISVFKGQTVIGGETILAYLQDAPKQLTVKSI

Sequences:

>Translated_226_residues
MLYNFIHNIHKEGYIFIMISFLASCIGFAISCSLGIICLVISLLCIYFFRDPIRMVPEGDDLITSPADGLILDIKEVNSP
IDDSTQVVCISIFLNVLNVHVNRIPVSGTIKATEYIPGRFISASLNKSSELNERQRLIIESKIDNRSIIVDQIAGLIARR
IVCNVSEGQQVNSGERFGIIRFGSRVNLYLPLNTHISVFKGQTVIGGETILAYLQDAPKQLTVKSI
>Mature_226_residues
MLYNFIHNIHKEGYIFIMISFLASCIGFAISCSLGIICLVISLLCIYFFRDPIRMVPEGDDLITSPADGLILDIKEVNSP
IDDSTQVVCISIFLNVLNVHVNRIPVSGTIKATEYIPGRFISASLNKSSELNERQRLIIESKIDNRSIIVDQIAGLIARR
IVCNVSEGQQVNSGERFGIIRFGSRVNLYLPLNTHISVFKGQTVIGGETILAYLQDAPKQLTVKSI

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_EHRCR (Q2GG56)

Other databases:

- EMBL:   CP000236
- RefSeq:   YP_507577.1
- STRING:   Q2GG56
- GeneID:   3927224
- GenomeReviews:   CP000236_GR
- KEGG:   ech:ECH_0779
- TIGR:   ECH_0779
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   ECHA205920:ECH_0779-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 25073; Mature: 25073

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYNFIHNIHKEGYIFIMISFLASCIGFAISCSLGIICLVISLLCIYFFRDPIRMVPEGD
CHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCC
DLITSPADGLILDIKEVNSPIDDSTQVVCISIFLNVLNVHVNRIPVSGTIKATEYIPGRF
CEECCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCEE
ISASLNKSSELNERQRLIIESKIDNRSIIVDQIAGLIARRIVCNVSEGQQVNSGERFGII
EEECCCCCCCCCHHHHEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
RFGSRVNLYLPLNTHISVFKGQTVIGGETILAYLQDAPKQLTVKSI
EECCEEEEEEECCCCEEEEECCEEECHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MLYNFIHNIHKEGYIFIMISFLASCIGFAISCSLGIICLVISLLCIYFFRDPIRMVPEGD
CHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCC
DLITSPADGLILDIKEVNSPIDDSTQVVCISIFLNVLNVHVNRIPVSGTIKATEYIPGRF
CEECCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCEE
ISASLNKSSELNERQRLIIESKIDNRSIIVDQIAGLIARRIVCNVSEGQQVNSGERFGII
EEECCCCCCCCCHHHHEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
RFGSRVNLYLPLNTHISVFKGQTVIGGETILAYLQDAPKQLTVKSI
EECCEEEEEEECCCCEEEEECCEEECHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA