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The map label for this gene is rbfA [H]

Identifier: 88607832

GI number: 88607832

Start: 470428

End: 470784

Strand: Direct

Name: rbfA [H]

Synonym: APH_0447

Alternate gene names: 88607832

Gene position: 470428-470784 (Clockwise)

Preceding gene: 88607319

Following gene: 88607130

Centisome position: 31.97

GC content: 41.74

Gene sequence:

>357_bases
GTGATTGTTTTTGATCATCCAGTTGAGCATAGGAGTCTCAAGGTTTCTTCAGTGCTCAAGAAGGCGCTTTCCGAGTTATT
TCTAAGGGAGTTCTATGATCTGAGTACGCTGATATCTGTTTCTGAAGTGAAGGTAGGGGAGGATCTTCGTAACGCAACGA
TTTTCGTTGTAGTCCGTGGTAAGGGTGTAGATGGTGACGAGATAGTGCGTGCCTTGAATGCCTCTTCTAATGTTGTGAGG
AAGTCTGTCTTTAAGTATCTCAAACTCAGGTATGTGCCTAGGTTGCATTTTAAATTAGATGTAGAGTTTGAGAATTTTTT
GCGTATTAGTGATGCGCTTGCAGTGTTGAATGACTAA

Upstream 100 bases:

>100_bases
GTGGGTTAGAGTGTGGTCTTCTTGTGGATGGCGTGAAGGGTGTGCTTGCTGGTGATGTAATTAAGGTTTTAGAGATTGTA
GAACGCATGAGGGGTGTGGA

Downstream 100 bases:

>100_bases
TTTTGTTGTTTGATATAAGTAATCACAGTTGAATTACAGGATATCAAGTTCTGTTTTATCTTCTGAGTAGTAGTCTTCTT
AAGCCCAGCTAGCGCCGCAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MIVFDHPVEHRSLKVSSVLKKALSELFLREFYDLSTLISVSEVKVGEDLRNATIFVVVRGKGVDGDEIVRALNASSNVVR
KSVFKYLKLRYVPRLHFKLDVEFENFLRISDALAVLND

Sequences:

>Translated_118_residues
MIVFDHPVEHRSLKVSSVLKKALSELFLREFYDLSTLISVSEVKVGEDLRNATIFVVVRGKGVDGDEIVRALNASSNVVR
KSVFKYLKLRYVPRLHFKLDVEFENFLRISDALAVLND
>Mature_118_residues
MIVFDHPVEHRSLKVSSVLKKALSELFLREFYDLSTLISVSEVKVGEDLRNATIFVVVRGKGVDGDEIVRALNASSNVVR
KSVFKYLKLRYVPRLHFKLDVEFENFLRISDALAVLND

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13481; Mature: 13481

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVFDHPVEHRSLKVSSVLKKALSELFLREFYDLSTLISVSEVKVGEDLRNATIFVVVRG
CEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
KGVDGDEIVRALNASSNVVRKSVFKYLKLRYVPRLHFKLDVEFENFLRISDALAVLND
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIVFDHPVEHRSLKVSSVLKKALSELFLREFYDLSTLISVSEVKVGEDLRNATIFVVVRG
CEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
KGVDGDEIVRALNASSNVVRKSVFKYLKLRYVPRLHFKLDVEFENFLRISDALAVLND
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA