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The map label for this gene is nusB

Identifier: 88607519

GI number: 88607519

Start: 558120

End: 558968

Strand: Reverse

Name: nusB

Synonym: APH_0538

Alternate gene names: NA

Gene position: 558968-558120 (Counterclockwise)

Preceding gene: 88607155

Following gene: 88606925

Centisome position: 37.99

GC content: 44.52

Gene sequence:

>849_bases
ATGATGGAAAAAGTGGTTAATGGAGCTCACGATGACATGCCATGGCATGTTGGAAAAACTTCTGCTAGATTCCTAGCGGT
ACAGGGTGCTTACGCCATGATGTTTGGTGCTTACACAGCATCTGATCTGGAGGACCTCTTGGAGCACTTGTGTGAAATGC
AGGAAGTGCTAGATTTACATAGGGTGGACAAGAAGTTGCTGTCTAAAATTCTGGGGTGCATGATAGAGAAATGTAACGAG
GTGGATAGTTTAATTTCGGTGCATCTAAATGAAAAATGGTCGATGGAGAGGATAAATTTGGTGAGCCTAGCTGTGATGAG
AGCTGGCGTGTGTGAGTTGCTCTGTTTAAAGACTAGTGAGTGTGTTATAATAAATGAATATGTAGGGATAGCTTCTACTG
TGCTGGAGAAGAGTGAGGTCAATTTTGTTAATGCCATATTGAATAAGGCAAAGACTGTGCGGTCTCCTGAATGCGATTTG
TCATTATCAACTTTTGCAGACGATTCTGATGGGGTCTCTACGGCGAAGTGTGAGAACGGGCTAAATCTGGGCGCAGGAGC
TAGGGTGAAGCTAGAAAGCGTTGATAATGCTGCAGATGCAGATTTGGGTGGTGTCTCAAAATCTGAAATTCCCGTAGTTT
CTAGGGAAGGTACTACTGGTAGAGTTTTGGGTGATTCTGAAATCCCACATATTGAGTGCTATCAAGAAATTGAGGAGGAT
GATAACGGAGGGACCGAGTCTGTAAGTCTGGATGATCTTATGGATTCGGGTGGAGATACGAGCGTGGCTGAAGCTCTTCG
TACCGTATCCGAAGTAGAGTCTTCTGATCTGCTGGTGGTAAGTTGCTAG

Upstream 100 bases:

>100_bases
GCTATGGAAAGGGCTGATGTAAATGGAATAAATATAGGTGGTAGAGCGGCTGCTGCAATGTTAAGAATGCTGGAATTGTA
TAGAAGGTTTTTGGGCTAGC

Downstream 100 bases:

>100_bases
TGAGTGGCTCGTAGAGGTATGGCTTGTCATGGCTAAAGGGGTCATCAGCATTCGTGGTGCAAGGGTTCATAATCTTAGGA
ACGTTGATGTAGATCTGCCT

Product: N utilization substance protein B

Products: NA

Alternate protein names: Transcription Termination Factor NusB; Transcription Antitermination Protein NusB; N Utilization Substance Protein B-Like Protein

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MMEKVVNGAHDDMPWHVGKTSARFLAVQGAYAMMFGAYTASDLEDLLEHLCEMQEVLDLHRVDKKLLSKILGCMIEKCNE
VDSLISVHLNEKWSMERINLVSLAVMRAGVCELLCLKTSECVIINEYVGIASTVLEKSEVNFVNAILNKAKTVRSPECDL
SLSTFADDSDGVSTAKCENGLNLGAGARVKLESVDNAADADLGGVSKSEIPVVSREGTTGRVLGDSEIPHIECYQEIEED
DNGGTESVSLDDLMDSGGDTSVAEALRTVSEVESSDLLVVSC

Sequences:

>Translated_282_residues
MMEKVVNGAHDDMPWHVGKTSARFLAVQGAYAMMFGAYTASDLEDLLEHLCEMQEVLDLHRVDKKLLSKILGCMIEKCNE
VDSLISVHLNEKWSMERINLVSLAVMRAGVCELLCLKTSECVIINEYVGIASTVLEKSEVNFVNAILNKAKTVRSPECDL
SLSTFADDSDGVSTAKCENGLNLGAGARVKLESVDNAADADLGGVSKSEIPVVSREGTTGRVLGDSEIPHIECYQEIEED
DNGGTESVSLDDLMDSGGDTSVAEALRTVSEVESSDLLVVSC
>Mature_282_residues
MMEKVVNGAHDDMPWHVGKTSARFLAVQGAYAMMFGAYTASDLEDLLEHLCEMQEVLDLHRVDKKLLSKILGCMIEKCNE
VDSLISVHLNEKWSMERINLVSLAVMRAGVCELLCLKTSECVIINEYVGIASTVLEKSEVNFVNAILNKAKTVRSPECDL
SLSTFADDSDGVSTAKCENGLNLGAGARVKLESVDNAADADLGGVSKSEIPVVSREGTTGRVLGDSEIPHIECYQEIEED
DNGGTESVSLDDLMDSGGDTSVAEALRTVSEVESSDLLVVSC

Specific function: Unknown

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30413; Mature: 30413

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEKVVNGAHDDMPWHVGKTSARFLAVQGAYAMMFGAYTASDLEDLLEHLCEMQEVLDLH
CCCHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
RVDKKLLSKILGCMIEKCNEVDSLISVHLNEKWSMERINLVSLAVMRAGVCELLCLKTSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
CVIINEYVGIASTVLEKSEVNFVNAILNKAKTVRSPECDLSLSTFADDSDGVSTAKCENG
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHCCCCCCCCCHHHHCCC
LNLGAGARVKLESVDNAADADLGGVSKSEIPVVSREGTTGRVLGDSEIPHIECYQEIEED
CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCCCHHHHHHHHHCC
DNGGTESVSLDDLMDSGGDTSVAEALRTVSEVESSDLLVVSC
CCCCCCCEEHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure
MMEKVVNGAHDDMPWHVGKTSARFLAVQGAYAMMFGAYTASDLEDLLEHLCEMQEVLDLH
CCCHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
RVDKKLLSKILGCMIEKCNEVDSLISVHLNEKWSMERINLVSLAVMRAGVCELLCLKTSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
CVIINEYVGIASTVLEKSEVNFVNAILNKAKTVRSPECDLSLSTFADDSDGVSTAKCENG
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHCCCCCCCCCHHHHCCC
LNLGAGARVKLESVDNAADADLGGVSKSEIPVVSREGTTGRVLGDSEIPHIECYQEIEED
CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCCCHHHHHHHHHCC
DNGGTESVSLDDLMDSGGDTSVAEALRTVSEVESSDLLVVSC
CCCCCCCEEHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA