Definition | Anaplasma phagocytophilum HZ, complete genome. |
---|---|
Accession | NC_007797 |
Length | 1,471,282 |
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The map label for this gene is uvrA [H]
Identifier: 88606925
GI number: 88606925
Start: 555227
End: 558091
Strand: Reverse
Name: uvrA [H]
Synonym: APH_0537
Alternate gene names: 88606925
Gene position: 558091-555227 (Counterclockwise)
Preceding gene: 88607519
Following gene: 88607061
Centisome position: 37.93
GC content: 42.44
Gene sequence:
>2865_bases ATGGCTAAAGGGGTCATCAGCATTCGTGGTGCAAGGGTTCATAATCTTAGGAACGTTGATGTAGATCTGCCTAAGAATAA GCTCATAGTCATCACTGGTGTTAGCGGTTCTGGAAAGTCTAGTCTAGCATTTGATACGCTTTACGCTGAAGGTCAGCGTA GATATGTCGAGAGTCTTTCTTCTTATACAAGGCAATTTGTGAACCTACAGGCTAAGCCTGATGTGGATTCCATTGAAGGA TTATCACCTGCTATCTCTGTGAGTCAGAAAACGGCCGGGAAAAACCCGCGTTCTACTGTTTCTACGGTTACGGAAATACA TGATTATCTGCGTTTAATGTTTGCTAGAGTGGGAGTGCCCTATTCTCCTACGACGAATCGTCCGATCGTGAAATTTACAG CATCGCGGATGGTGAAGGAGATAGCAAATCTTCCTCCCGGAGCGAGGGTATACTTACTTGCGCCCATCGCCCAGGATAAG CATACTGAGTATGTTAAAGAAATATCTAACATACGTAAACAAGGTTATGTTCGAATAAGTATAGATGGGGTAGTTTACGA TATTAATGAGATTCCCAAGTTAGAGCATAACAAGCGCTACGATATTTCAGTGGTGGTAGATCGTTTAGTTATAACTGGAG AGAGATCGAATCGCATATCGAGTAGTGTGGAAAATGCGTTAGCTGTGGGTCATGGGGTCTTATGCGTTAAAATAGTAACC TTACCTGGTGATTACACTGATGGTGAATATGTAGAAGGCCAAGTATTGGTATTTTCAGAGCATTTTCTCTGTCCTGATAG TGGCTTTAATGTGGGAGCAATAGAGCCAAAGCTCTTTTCGTTCAACATAGTAAATAGTGCATGCCAATACTGCATGGGTC TAGGAAGAAGCCGTGCTGTAGATGTAAATATGCTAGTACCCAATGTGGAATTATCTATCATTGAGGGCGCTATAGATCCT ATTGGCCCGGTAAAACCCGCGTGTTATTCGTCGTATGAGTCTACTTTCGTGCATAAATGTTGCACTGAGATACTTGCTAT CGCTAAAAAGTTTGGCATCGATATAGCTCAACCCTGGCACCGTTTGGATTTGAAATCCCGCAACCTGCTAATGTTTGGGA ATGAAGAGGGAGATCTCAACGCGGCTAAGGTGGGAAATTTTAAGGGTGTCGTGGGCTATTTAAGTGATACAGGAAACGTA GTGGCTGAAAAAATAGCGGAAAGGTATTCTGTATTTAGAAAGTGTCCTCACTGTGCCGGTTTTAGATTATCACCTCAGGC TTTGAGTGTGAAAATTGACGGGAAGCATATTGGTAATGTATGCGCCATGACGGTAAGTGAGACGATTGAGTGGTGTGAGG GGTTACCTGCTAGACTGACGGATTTCGAGAAACAAATCTGCTCAAAGCTGTTAGATGAAATAATAAGGCGGCTTACTTTC TTGTCGAACGTCGGGCTTGGATATTTGACGCTAGATCGGGAGTCTAGGACACTATCTGGCGGTGAAAGTCAACGTATAAA GTTAGCGTCTCATGTTGGATCTAGCCTCACTGGAGTTCTATATGTTCTTGACGAACCTTCTATTGGGCTACATCAACGTG ACAATGCTTTACTAATTGAAACTTTAAAGAATCTTCGGGACTTGGAAAACACTGTTGTAGTTATTGAGCACGACGAAGAG ACTATGATGCATGCGGACCATATAGTTGACGTGGGTCCTGGTGCAGGGGTTAATGGAGGACAAATTGTTGCTCAAGGCAG TTTGGAAGAGATACTTTCTAATACTGATAGTATAACAGGGAGATTTCTTAGCGGAAAGATGGATATTCCGATTTCTGATT GCAATAAAACGTTCTCAAAATGGATTAAGATTCGAGGTGCTTATAAAAATAATCTCAAAAATGTTGATGTAACGATTCCC ATTGGTGGATTTACCTGTGTAACGGGGGTTTCTGGGAGTGGAAAGTCGAGTCTCATAGGAGATATACTGTATCCGTATGC TCTGCATAAAGTCTATGGGGTTACACCTCCACCAACGGAGTGCGCTGGAATCCTAGGGCTTGAGAATATAGATAAGGTTA TAGAGATAGACCAATCCCCTATTGGCAGAACGCCTGCTTCAAATCCCGCTACTTACGTAGGGTTATTCACGCATATACGT TCGTGGTTTGCTGGGCTACCTTTAGCAAAATCACGCGGATATACGATGAGTAGATTTTCTTTTAACGCTAAAGGTGGAAG ATGCGAGTCTTGTAAGGGTGACATGTATATGAAAATAGAAATGCACTTTTTACCTGACATGTACGTCACCTGTGAGGAGT GTAACGGGCTGCGCTACAACCGAGAAACTTTAGAAGTTCTATACAAAGGAAAGTCTATAGCTGATGTTTTGGATATGACT GTTGACCAAGCATTGGACTTTTTCTCAGCTATTCCTCTCATCAGAGAAAAGCTAGAATCCTTACAAAGTGTAGGAATGGG GTATATCAAGATCGGACAGCCCTCTACTACCCTATCTGGGGGTGAATCACAAAGAATAAAGATGTCGAAAGAACTATCGA AGCGGTCGACTGGGAACACATTATACATTCTTGATGAACCCACTACAGGGCTGCATATTTCTGATATTCAGAACTTGCTA CAAATTCTACATCGGCTTTCTGACATGGGTAATACTGTAGTGGTGATAGAGCATAATTTACACGTAATAAAAACTGCTGA TTACATAATAGATATTGGGCCTGAAGGTGGGACTCATGGAGGTGAAGTTGTGGGAGTCGGCTCACCGCATGAACTTGTGA AGAACTATCCTAACAGCATCACTGCTAAATACTTAGCTCCTTACTTAAAGAGCGCTAAATCCTAA
Upstream 100 bases:
>100_bases ACGAGCGTGGCTGAAGCTCTTCGTACCGTATCCGAAGTAGAGTCTTCTGATCTGCTGGTGGTAAGTTGCTAGTGAGTGGC TCGTAGAGGTATGGCTTGTC
Downstream 100 bases:
>100_bases ATGATCTGAAATTGCAGCCTATGAATTGCTGCAGCTGAGTGCATAGTCTAAGCCTATGGCCCATTGCTATATACTATTCC GCAACACATCTCGCGACTTA
Product: excinuclease ABC, A subunit
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 954; Mature: 953
Protein sequence:
>954_residues MAKGVISIRGARVHNLRNVDVDLPKNKLIVITGVSGSGKSSLAFDTLYAEGQRRYVESLSSYTRQFVNLQAKPDVDSIEG LSPAISVSQKTAGKNPRSTVSTVTEIHDYLRLMFARVGVPYSPTTNRPIVKFTASRMVKEIANLPPGARVYLLAPIAQDK HTEYVKEISNIRKQGYVRISIDGVVYDINEIPKLEHNKRYDISVVVDRLVITGERSNRISSSVENALAVGHGVLCVKIVT LPGDYTDGEYVEGQVLVFSEHFLCPDSGFNVGAIEPKLFSFNIVNSACQYCMGLGRSRAVDVNMLVPNVELSIIEGAIDP IGPVKPACYSSYESTFVHKCCTEILAIAKKFGIDIAQPWHRLDLKSRNLLMFGNEEGDLNAAKVGNFKGVVGYLSDTGNV VAEKIAERYSVFRKCPHCAGFRLSPQALSVKIDGKHIGNVCAMTVSETIEWCEGLPARLTDFEKQICSKLLDEIIRRLTF LSNVGLGYLTLDRESRTLSGGESQRIKLASHVGSSLTGVLYVLDEPSIGLHQRDNALLIETLKNLRDLENTVVVIEHDEE TMMHADHIVDVGPGAGVNGGQIVAQGSLEEILSNTDSITGRFLSGKMDIPISDCNKTFSKWIKIRGAYKNNLKNVDVTIP IGGFTCVTGVSGSGKSSLIGDILYPYALHKVYGVTPPPTECAGILGLENIDKVIEIDQSPIGRTPASNPATYVGLFTHIR SWFAGLPLAKSRGYTMSRFSFNAKGGRCESCKGDMYMKIEMHFLPDMYVTCEECNGLRYNRETLEVLYKGKSIADVLDMT VDQALDFFSAIPLIREKLESLQSVGMGYIKIGQPSTTLSGGESQRIKMSKELSKRSTGNTLYILDEPTTGLHISDIQNLL QILHRLSDMGNTVVVIEHNLHVIKTADYIIDIGPEGGTHGGEVVGVGSPHELVKNYPNSITAKYLAPYLKSAKS
Sequences:
>Translated_954_residues MAKGVISIRGARVHNLRNVDVDLPKNKLIVITGVSGSGKSSLAFDTLYAEGQRRYVESLSSYTRQFVNLQAKPDVDSIEG LSPAISVSQKTAGKNPRSTVSTVTEIHDYLRLMFARVGVPYSPTTNRPIVKFTASRMVKEIANLPPGARVYLLAPIAQDK HTEYVKEISNIRKQGYVRISIDGVVYDINEIPKLEHNKRYDISVVVDRLVITGERSNRISSSVENALAVGHGVLCVKIVT LPGDYTDGEYVEGQVLVFSEHFLCPDSGFNVGAIEPKLFSFNIVNSACQYCMGLGRSRAVDVNMLVPNVELSIIEGAIDP IGPVKPACYSSYESTFVHKCCTEILAIAKKFGIDIAQPWHRLDLKSRNLLMFGNEEGDLNAAKVGNFKGVVGYLSDTGNV VAEKIAERYSVFRKCPHCAGFRLSPQALSVKIDGKHIGNVCAMTVSETIEWCEGLPARLTDFEKQICSKLLDEIIRRLTF LSNVGLGYLTLDRESRTLSGGESQRIKLASHVGSSLTGVLYVLDEPSIGLHQRDNALLIETLKNLRDLENTVVVIEHDEE TMMHADHIVDVGPGAGVNGGQIVAQGSLEEILSNTDSITGRFLSGKMDIPISDCNKTFSKWIKIRGAYKNNLKNVDVTIP IGGFTCVTGVSGSGKSSLIGDILYPYALHKVYGVTPPPTECAGILGLENIDKVIEIDQSPIGRTPASNPATYVGLFTHIR SWFAGLPLAKSRGYTMSRFSFNAKGGRCESCKGDMYMKIEMHFLPDMYVTCEECNGLRYNRETLEVLYKGKSIADVLDMT VDQALDFFSAIPLIREKLESLQSVGMGYIKIGQPSTTLSGGESQRIKMSKELSKRSTGNTLYILDEPTTGLHISDIQNLL QILHRLSDMGNTVVVIEHNLHVIKTADYIIDIGPEGGTHGGEVVGVGSPHELVKNYPNSITAKYLAPYLKSAKS >Mature_953_residues AKGVISIRGARVHNLRNVDVDLPKNKLIVITGVSGSGKSSLAFDTLYAEGQRRYVESLSSYTRQFVNLQAKPDVDSIEGL SPAISVSQKTAGKNPRSTVSTVTEIHDYLRLMFARVGVPYSPTTNRPIVKFTASRMVKEIANLPPGARVYLLAPIAQDKH TEYVKEISNIRKQGYVRISIDGVVYDINEIPKLEHNKRYDISVVVDRLVITGERSNRISSSVENALAVGHGVLCVKIVTL PGDYTDGEYVEGQVLVFSEHFLCPDSGFNVGAIEPKLFSFNIVNSACQYCMGLGRSRAVDVNMLVPNVELSIIEGAIDPI GPVKPACYSSYESTFVHKCCTEILAIAKKFGIDIAQPWHRLDLKSRNLLMFGNEEGDLNAAKVGNFKGVVGYLSDTGNVV AEKIAERYSVFRKCPHCAGFRLSPQALSVKIDGKHIGNVCAMTVSETIEWCEGLPARLTDFEKQICSKLLDEIIRRLTFL SNVGLGYLTLDRESRTLSGGESQRIKLASHVGSSLTGVLYVLDEPSIGLHQRDNALLIETLKNLRDLENTVVVIEHDEET MMHADHIVDVGPGAGVNGGQIVAQGSLEEILSNTDSITGRFLSGKMDIPISDCNKTFSKWIKIRGAYKNNLKNVDVTIPI GGFTCVTGVSGSGKSSLIGDILYPYALHKVYGVTPPPTECAGILGLENIDKVIEIDQSPIGRTPASNPATYVGLFTHIRS WFAGLPLAKSRGYTMSRFSFNAKGGRCESCKGDMYMKIEMHFLPDMYVTCEECNGLRYNRETLEVLYKGKSIADVLDMTV DQALDFFSAIPLIREKLESLQSVGMGYIKIGQPSTTLSGGESQRIKMSKELSKRSTGNTLYILDEPTTGLHISDIQNLLQ ILHRLSDMGNTVVVIEHNLHVIKTADYIIDIGPEGGTHGGEVVGVGSPHELVKNYPNSITAKYLAPYLKSAKS
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=963, Percent_Identity=49.9480789200415, Blast_Score=916, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104443; Mature: 104312
Theoretical pI: Translated: 7.31; Mature: 7.31
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKGVISIRGARVHNLRNVDVDLPKNKLIVITGVSGSGKSSLAFDTLYAEGQRRYVESLS CCCCEEEECCCEECCCCCCCEECCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHH SYTRQFVNLQAKPDVDSIEGLSPAISVSQKTAGKNPRSTVSTVTEIHDYLRLMFARVGVP HHHHHHHCCCCCCCCCHHCCCCCHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC YSPTTNRPIVKFTASRMVKEIANLPPGARVYLLAPIAQDKHTEYVKEISNIRKQGYVRIS CCCCCCCCEEEHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEE IDGVVYDINEIPKLEHNKRYDISVVVDRLVITGERSNRISSSVENALAVGHGVLCVKIVT ECEEEEECHHCCCCCCCCCCCHHEEEEEHEEECCCCHHHHHHHHHHHHHCCCEEEEEEEE LPGDYTDGEYVEGQVLVFSEHFLCPDSGFNVGAIEPKLFSFNIVNSACQYCMGLGRSRAV CCCCCCCCCEECCEEEEEECCEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCEE DVNMLVPNVELSIIEGAIDPIGPVKPACYSSYESTFVHKCCTEILAIAKKFGIDIAQPWH EEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH RLDLKSRNLLMFGNEEGDLNAAKVGNFKGVVGYLSDTGNVVAEKIAERYSVFRKCPHCAG HCCCCCCCEEEEECCCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC FRLSPQALSVKIDGKHIGNVCAMTVSETIEWCEGLPARLTDFEKQICSKLLDEIIRRLTF CEECCCEEEEEECCCHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LSNVGLGYLTLDRESRTLSGGESQRIKLASHVGSSLTGVLYVLDEPSIGLHQRDNALLIE HHCCCCEEEEECCCCCCCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHH TLKNLRDLENTVVVIEHDEETMMHADHIVDVGPGAGVNGGQIVAQGSLEEILSNTDSITG HHHHHHCCCCEEEEEECCCHHHHHHCCEEECCCCCCCCCCEEEECCCHHHHHCCCCCCCE RFLSGKMDIPISDCNKTFSKWIKIRGAYKNNLKNVDVTIPIGGFTCVTGVSGSGKSSLIG EEECCCCCCCHHHHHHHHHHHHEECCHHHCCCCEEEEEEECCCEEEEECCCCCCCHHHHH DILYPYALHKVYGVTPPPTECAGILGLENIDKVIEIDQSPIGRTPASNPATYVGLFTHIR HHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH SWFAGLPLAKSRGYTMSRFSFNAKGGRCESCKGDMYMKIEMHFLPDMYVTCEECNGLRYN HHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCEEEHHHCCCCEEC RETLEVLYKGKSIADVLDMTVDQALDFFSAIPLIREKLESLQSVGMGYIKIGQPSTTLSG HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC GESQRIKMSKELSKRSTGNTLYILDEPTTGLHISDIQNLLQILHRLSDMGNTVVVIEHNL CCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCEEEEEECCE HVIKTADYIIDIGPEGGTHGGEVVGVGSPHELVKNYPNSITAKYLAPYLKSAKS EEEEEEEEEEEECCCCCCCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure AKGVISIRGARVHNLRNVDVDLPKNKLIVITGVSGSGKSSLAFDTLYAEGQRRYVESLS CCCEEEECCCEECCCCCCCEECCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHH SYTRQFVNLQAKPDVDSIEGLSPAISVSQKTAGKNPRSTVSTVTEIHDYLRLMFARVGVP HHHHHHHCCCCCCCCCHHCCCCCHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC YSPTTNRPIVKFTASRMVKEIANLPPGARVYLLAPIAQDKHTEYVKEISNIRKQGYVRIS CCCCCCCCEEEHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEE IDGVVYDINEIPKLEHNKRYDISVVVDRLVITGERSNRISSSVENALAVGHGVLCVKIVT ECEEEEECHHCCCCCCCCCCCHHEEEEEHEEECCCCHHHHHHHHHHHHHCCCEEEEEEEE LPGDYTDGEYVEGQVLVFSEHFLCPDSGFNVGAIEPKLFSFNIVNSACQYCMGLGRSRAV CCCCCCCCCEECCEEEEEECCEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCEE DVNMLVPNVELSIIEGAIDPIGPVKPACYSSYESTFVHKCCTEILAIAKKFGIDIAQPWH EEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH RLDLKSRNLLMFGNEEGDLNAAKVGNFKGVVGYLSDTGNVVAEKIAERYSVFRKCPHCAG HCCCCCCCEEEEECCCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC FRLSPQALSVKIDGKHIGNVCAMTVSETIEWCEGLPARLTDFEKQICSKLLDEIIRRLTF CEECCCEEEEEECCCHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LSNVGLGYLTLDRESRTLSGGESQRIKLASHVGSSLTGVLYVLDEPSIGLHQRDNALLIE HHCCCCEEEEECCCCCCCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHH TLKNLRDLENTVVVIEHDEETMMHADHIVDVGPGAGVNGGQIVAQGSLEEILSNTDSITG HHHHHHCCCCEEEEEECCCHHHHHHCCEEECCCCCCCCCCEEEECCCHHHHHCCCCCCCE RFLSGKMDIPISDCNKTFSKWIKIRGAYKNNLKNVDVTIPIGGFTCVTGVSGSGKSSLIG EEECCCCCCCHHHHHHHHHHHHEECCHHHCCCCEEEEEEECCCEEEEECCCCCCCHHHHH DILYPYALHKVYGVTPPPTECAGILGLENIDKVIEIDQSPIGRTPASNPATYVGLFTHIR HHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH SWFAGLPLAKSRGYTMSRFSFNAKGGRCESCKGDMYMKIEMHFLPDMYVTCEECNGLRYN HHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCEEEHHHCCCCEEC RETLEVLYKGKSIADVLDMTVDQALDFFSAIPLIREKLESLQSVGMGYIKIGQPSTTLSG HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC GESQRIKMSKELSKRSTGNTLYILDEPTTGLHISDIQNLLQILHRLSDMGNTVVVIEHNL CCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCEEEEEECCE HVIKTADYIIDIGPEGGTHGGEVVGVGSPHELVKNYPNSITAKYLAPYLKSAKS EEEEEEEEEEEECCCCCCCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]