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The map label for this gene is yqgF [C]

Identifier: 88607507

GI number: 88607507

Start: 315968

End: 316468

Strand: Direct

Name: yqgF [C]

Synonym: APH_0332

Alternate gene names: 88607507

Gene position: 315968-316468 (Clockwise)

Preceding gene: 88606797

Following gene: 88607518

Centisome position: 21.48

GC content: 47.7

Gene sequence:

>501_bases
ATGCTGTGCGAGAGTATTAGGGAGCTTTTCTCGGCGTTGGAACCTGGCAGAAGGATTCTAGGTATAGACTTTGGGGAGAG
AAAAATAGGATTGGCATTGAGTGATCCTACCTACCTTATAGCCATACCGCACAGCGTATATCATAGGCGTAACATGCGCC
AGGATCTTGGCGAGTTGAGTGCTGTCTTGCGTTCTGAAGATGCTGCTGTTGTGGTTATGGGAAATCCGCTGCAATCAGAT
GGTTTGGAAGGGGAAATGTGTCAGATTGTGCGTGCATTTGCCCAGAAGTTAATTAAGAAGTCAGGGGTAAGCATATATCT
TCACGATGAGCGGTATACCACTGCCATGGCTAGTAGGGCAACGCGTGAAGCAGGTTTGCGCCGGAAGGAGTCTCAAAAGA
TAGATGATAAGATATCTGCGGCATTGGTTCTGCAACAGGTCTTAGATATTGCGCGAGCAGAGGGTATACAGGCCACGGGT
GGTAATAATAGTTGTCTGTGA

Upstream 100 bases:

>100_bases
TTCAGCTACGATGAGTGTTTGTCCTGTCAGTAACGCTGGGGTATTGCGTGAAGAGCGGTGACTAGGCGAGAGTGGGAACT
TTATTTACGGCTATAAGGTG

Downstream 100 bases:

>100_bases
TCGTGCGGCATTAGAATATATACTGATTACTAACGATTACACATTGGGTGCATTTTGGGGTATGCTGTGGTGGAATATGT
TGTTCCTTGTACTCTTGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MLCESIRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELSAVLRSEDAAVVVMGNPLQSD
GLEGEMCQIVRAFAQKLIKKSGVSIYLHDERYTTAMASRATREAGLRRKESQKIDDKISAALVLQQVLDIARAEGIQATG
GNNSCL

Sequences:

>Translated_166_residues
MLCESIRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELSAVLRSEDAAVVVMGNPLQSD
GLEGEMCQIVRAFAQKLIKKSGVSIYLHDERYTTAMASRATREAGLRRKESQKIDDKISAALVLQQVLDIARAEGIQATG
GNNSCL
>Mature_166_residues
MLCESIRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELSAVLRSEDAAVVVMGNPLQSD
GLEGEMCQIVRAFAQKLIKKSGVSIYLHDERYTTAMASRATREAGLRRKESQKIDDKISAALVLQQVLDIARAEGIQATG
GNNSCL

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_ANAPZ (Q2GL11)

Other databases:

- EMBL:   CP000235
- RefSeq:   YP_504940.1
- ProteinModelPortal:   Q2GL11
- SMR:   Q2GL11
- STRING:   Q2GL11
- GeneID:   3930978
- GenomeReviews:   CP000235_GR
- KEGG:   aph:APH_0332
- NMPDR:   fig|212042.5.peg.315
- TIGR:   APH_0332
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VEVILWD
- PhylomeDB:   Q2GL11
- ProtClustDB:   CLSK749487
- BioCyc:   APHA212042:APH_0332-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 18285; Mature: 18285

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCESIRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELS
CCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHH
AVLRSEDAAVVVMGNPLQSDGLEGEMCQIVRAFAQKLIKKSGVSIYLHDERYTTAMASRA
HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
TREAGLRRKESQKIDDKISAALVLQQVLDIARAEGIQATGGNNSCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLCESIRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELS
CCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHH
AVLRSEDAAVVVMGNPLQSDGLEGEMCQIVRAFAQKLIKKSGVSIYLHDERYTTAMASRA
HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
TREAGLRRKESQKIDDKISAALVLQQVLDIARAEGIQATGGNNSCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA