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The map label for this gene is 88607237

Identifier: 88607237

GI number: 88607237

Start: 229965

End: 230600

Strand: Direct

Name: 88607237

Synonym: APH_0232

Alternate gene names: NA

Gene position: 229965-230600 (Clockwise)

Preceding gene: 88606706

Following gene: 88606775

Centisome position: 15.63

GC content: 43.08

Gene sequence:

>636_bases
GTGAAGCAGCTCGTCGTAATAGCGCTTGTGTTTGTAGCAAGTCAGTTGATGCCTGTTTCACACGCAGGAGCAGTGGATTC
TGTGCTTGTGAATTGTGTCGAGACGCCTGGTATTAATGATACGAAAGACAATCACAGACCGGATGTTTTCAACCTTTCTA
ATAATTTAGCAAGGCGTGTAGGCAGTGCTGATGTCGCAAGAGGAAAGGTTATATATCTTGTTGGCAGAGTAACTGATGCA
CATTGTACTCCTTTGACCAATGTGAATGTTTTTATCTGGCAGGCTGATTCTCGGGGTGTTTATGCTGGTCATAGAGGCTA
CGATAAGAAGTTTCTTGGGTCTGGTAAAGCTACCACAGATAACTTGGGCAATTTTGGCTTTATTACGGTAATACCGGGGG
GAAACTCTGATAGTGATCCTGTAATACACTTTCTAATAAAACATCCAGCATTCCCTGAGTTTCAAACCGATATGTTTTTT
GAGGGAATTGGCAATCAAGGGCTCTCAAATCTGAGCAGAATCCCAAGTGCTATGAGAAGGTTGCTCACAGCGCGGTATGC
AGGGAAAAAAGGTGGTGTACCTGTTTACGAATTTAATCTTACGTTTGCAGATAATACAAGCACTCCATACGAGTAG

Upstream 100 bases:

>100_bases
TATTTCCAACTTTGTTTTGCATACCGTTTATAGCTGTGCTAGATGGTGTTACTGCAGGGAAGGGCAGGAGAGAAGGTTGA
GGAACGGTCAGTTTTGCAAA

Downstream 100 bases:

>100_bases
ATAAAAAACGTAAAAGCTTTTACAGTGACCTCTACCCTGGTTTTCCGGAACCGAACGTTTCAGCGTTCAATTCAGAATTT
GATTTTGGTTGTGCAAAAGT

Product: dioxygenase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKQLVVIALVFVASQLMPVSHAGAVDSVLVNCVETPGINDTKDNHRPDVFNLSNNLARRVGSADVARGKVIYLVGRVTDA
HCTPLTNVNVFIWQADSRGVYAGHRGYDKKFLGSGKATTDNLGNFGFITVIPGGNSDSDPVIHFLIKHPAFPEFQTDMFF
EGIGNQGLSNLSRIPSAMRRLLTARYAGKKGGVPVYEFNLTFADNTSTPYE

Sequences:

>Translated_211_residues
MKQLVVIALVFVASQLMPVSHAGAVDSVLVNCVETPGINDTKDNHRPDVFNLSNNLARRVGSADVARGKVIYLVGRVTDA
HCTPLTNVNVFIWQADSRGVYAGHRGYDKKFLGSGKATTDNLGNFGFITVIPGGNSDSDPVIHFLIKHPAFPEFQTDMFF
EGIGNQGLSNLSRIPSAMRRLLTARYAGKKGGVPVYEFNLTFADNTSTPYE
>Mature_211_residues
MKQLVVIALVFVASQLMPVSHAGAVDSVLVNCVETPGINDTKDNHRPDVFNLSNNLARRVGSADVARGKVIYLVGRVTDA
HCTPLTNVNVFIWQADSRGVYAGHRGYDKKFLGSGKATTDNLGNFGFITVIPGGNSDSDPVIHFLIKHPAFPEFQTDMFF
EGIGNQGLSNLSRIPSAMRRLLTARYAGKKGGVPVYEFNLTFADNTSTPYE

Specific function: Unknown

COG id: COG3485

COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000627
- InterPro:   IPR015889 [H]

Pfam domain/function: PF00775 Dioxygenase_C [H]

EC number: NA

Molecular weight: Translated: 22932; Mature: 22932

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLVVIALVFVASQLMPVSHAGAVDSVLVNCVETPGINDTKDNHRPDVFNLSNNLARRV
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHC
GSADVARGKVIYLVGRVTDAHCTPLTNVNVFIWQADSRGVYAGHRGYDKKFLGSGKATTD
CCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCHHCCCCCCCCC
NLGNFGFITVIPGGNSDSDPVIHFLIKHPAFPEFQTDMFFEGIGNQGLSNLSRIPSAMRR
CCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH
LLTARYAGKKGGVPVYEFNLTFADNTSTPYE
HHHHHHCCCCCCCEEEEEEEEEECCCCCCCC
>Mature Secondary Structure
MKQLVVIALVFVASQLMPVSHAGAVDSVLVNCVETPGINDTKDNHRPDVFNLSNNLARRV
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHC
GSADVARGKVIYLVGRVTDAHCTPLTNVNVFIWQADSRGVYAGHRGYDKKFLGSGKATTD
CCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCHHCCCCCCCCC
NLGNFGFITVIPGGNSDSDPVIHFLIKHPAFPEFQTDMFFEGIGNQGLSNLSRIPSAMRR
CCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH
LLTARYAGKKGGVPVYEFNLTFADNTSTPYE
HHHHHHCCCCCCCEEEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA