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The map label for this gene is psd

Identifier: 88607208

GI number: 88607208

Start: 564038

End: 564721

Strand: Reverse

Name: psd

Synonym: APH_0544

Alternate gene names: 88607208

Gene position: 564721-564038 (Counterclockwise)

Preceding gene: 88606932

Following gene: 88606831

Centisome position: 38.38

GC content: 44.15

Gene sequence:

>684_bases
ATGTGTTTTCCCAATATTCATAAGCAAGGGTATCCGTTTATAGCGATCGCGTTCGTGTTGACGTGCATTGGTTTCGCCTT
TTCTTTCGGACTCGGATTGGTTTTTCAGATTATTACCGTACTTTGCGCGTGCTTCTTCCGTAATCCTGATCGTATTGTTC
CAGTAGATGATAAGTTGATTATAAGCCCTGCAGATGGTTTAGTTACATCTGTGGCAGAGGTAGAATCTCCGATAGAAGCT
GGCAAGATGGTCACTCGAGTAAGTGTGTTCTTGAGTATACTTAATGTGCATGTGAACCGTGCTCCTGTTTCAGGGTCAGT
AAAGCTTGTTGAGCACAGACCAGGTAGGTTTTCTCCTGCATGCACAGATGGCTCTACAAGTGAGAATGAAAGAGTTAGGT
CAGTCATAGAATCGACATTTGGTAACCACAATATCGTCATTGAGCAGGTTGCTGGCGTTCTTGCTCGAAGGATAGTATGC
GATTTAAAGGTGGGTGATAACGTAAAGCTTGGAAGCAGAATGGGTATCATCAGATTTGGCAGTAGAGTTAATGTCTATGT
GCCTGCGGGGGTACCAGTTTTGGTAACTGAAGGCCATACCTTAGTGGGTGGAGAGACCGTTATTGCTGATTTAGATAGCG
AGCGTACTGCGGGATATCCTAGAGCAACTTTTGAAAAGGTGTAA

Upstream 100 bases:

>100_bases
GCATTGTTATCAGCAAATATAGAACACATTTAAAAGATGCATTGCAATTTGAAAAACAAGTTCCTACAATCTGCGTGTTT
ACAGTAGCTAACGATGTGTT

Downstream 100 bases:

>100_bases
TTGCTAGCATTGTGAATTCGTGGTAACACTCCGATAGGTTCTATTTATGGTTGTGCTGTTTCATGGGAGAAAGTGATATC
AAGGAAAGAAGCGGTGATGG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MCFPNIHKQGYPFIAIAFVLTCIGFAFSFGLGLVFQIITVLCACFFRNPDRIVPVDDKLIISPADGLVTSVAEVESPIEA
GKMVTRVSVFLSILNVHVNRAPVSGSVKLVEHRPGRFSPACTDGSTSENERVRSVIESTFGNHNIVIEQVAGVLARRIVC
DLKVGDNVKLGSRMGIIRFGSRVNVYVPAGVPVLVTEGHTLVGGETVIADLDSERTAGYPRATFEKV

Sequences:

>Translated_227_residues
MCFPNIHKQGYPFIAIAFVLTCIGFAFSFGLGLVFQIITVLCACFFRNPDRIVPVDDKLIISPADGLVTSVAEVESPIEA
GKMVTRVSVFLSILNVHVNRAPVSGSVKLVEHRPGRFSPACTDGSTSENERVRSVIESTFGNHNIVIEQVAGVLARRIVC
DLKVGDNVKLGSRMGIIRFGSRVNVYVPAGVPVLVTEGHTLVGGETVIADLDSERTAGYPRATFEKV
>Mature_227_residues
MCFPNIHKQGYPFIAIAFVLTCIGFAFSFGLGLVFQIITVLCACFFRNPDRIVPVDDKLIISPADGLVTSVAEVESPIEA
GKMVTRVSVFLSILNVHVNRAPVSGSVKLVEHRPGRFSPACTDGSTSENERVRSVIESTFGNHNIVIEQVAGVLARRIVC
DLKVGDNVKLGSRMGIIRFGSRVNVYVPAGVPVLVTEGHTLVGGETVIADLDSERTAGYPRATFEKV

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_ANAPZ (Q2GKG5)

Other databases:

- EMBL:   CP000235
- RefSeq:   YP_505136.1
- STRING:   Q2GKG5
- GeneID:   3931063
- GenomeReviews:   CP000235_GR
- KEGG:   aph:APH_0544
- NMPDR:   fig|212042.5.peg.535
- TIGR:   APH_0544
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   APHA212042:APH_0544-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24488; Mature: 24488

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCFPNIHKQGYPFIAIAFVLTCIGFAFSFGLGLVFQIITVLCACFFRNPDRIVPVDDKLI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEE
ISPADGLVTSVAEVESPIEAGKMVTRVSVFLSILNVHVNRAPVSGSVKLVEHRPGRFSPA
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
CTDGSTSENERVRSVIESTFGNHNIVIEQVAGVLARRIVCDLKVGDNVKLGSRMGIIRFG
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEC
SRVNVYVPAGVPVLVTEGHTLVGGETVIADLDSERTAGYPRATFEKV
CEEEEEECCCCEEEEECCCEEECCCEEEEECCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MCFPNIHKQGYPFIAIAFVLTCIGFAFSFGLGLVFQIITVLCACFFRNPDRIVPVDDKLI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEE
ISPADGLVTSVAEVESPIEAGKMVTRVSVFLSILNVHVNRAPVSGSVKLVEHRPGRFSPA
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
CTDGSTSENERVRSVIESTFGNHNIVIEQVAGVLARRIVCDLKVGDNVKLGSRMGIIRFG
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEC
SRVNVYVPAGVPVLVTEGHTLVGGETVIADLDSERTAGYPRATFEKV
CEEEEEECCCCEEEEECCCEEECCCEEEEECCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA