Click here to switch to the map view.

The map label for this gene is secY [H]

Identifier: 88607078

GI number: 88607078

Start: 283700

End: 285004

Strand: Direct

Name: secY [H]

Synonym: APH_0299

Alternate gene names: 88607078

Gene position: 283700-285004 (Clockwise)

Preceding gene: 88606930

Following gene: 88607898

Centisome position: 19.28

GC content: 41.99

Gene sequence:

>1305_bases
GTGAGTGCGGCGTCGCTTGGTAGTAGAGTTGGTTTGCTGAAGAGGTTTGGGTTCACGCTATTCGCTCTTATAGTGTACAG
GTTGGGAACTTATATTCCTATTCCTGGTATAAATTTAGGTGTAATAGGTGAGATAGTTTCTGGGCATACTACTGGTGTGT
TGGGCATTTTCAATGTGTTCTCAGGTGGTGCTTTGGGGCGTATGACTATATTTGCGCTCAATGTTATGCCTTACATTGTA
TCTTCCATAATGGTGCAGTTGCTTTCTGTAGCTGTTCCTGCTCTTAATGAAATGAGGCAGGAGGGTGAGCTTGGCAGGGC
AAAGATAAACTCCTATACGCGGTATCTCACTGTAGTTTTTTGTATTGTTCAAGGTCTGATGATTTTGTTAGGGCTTGAGC
GCATGAATACTGCTGAGGTTATGGTTGTACTTGATCCAGGTCTTACCTTTAGGGTGGTTGGGATCAGTAGCATGTTAGCA
GGTACGATGTTCTTGCTATGGTTGGGTGAGCGTATCAATCTCAAGGGGATAGGTAATGGTATTTCCTTGATTATCTTTGT
GGGAATAATCTCAGAATTGCCTAGTTCTTTATCTTCCGTGTTCATGTTAGGGAAACGAGGGGAGTTGTCAGGATTCGCTG
TATTTTTGGTTATGGCATCCTTTCTTGCGTTGTTTCTGCTCATTATCTTTTTTGAGAGATCGTATAGAAAGGTTTTGGTG
CAGTATCCTAAGCGGCAAGTGGGCGGGCGCTTTTATAATAGTGACTCCAGCTACATGCCTTTGAAGATAAACATTTCTGG
CGTTATACCTCCGATCTTTGCAAATGCGTTGTTACTATCGTTGATGACTCTTGCTAAATTTAGTGCTGGTTCATCATGGT
CTGACTTTGTATTGAGATACTTTCATACTGAAAGCGTGCTATACATCGTTGTATATGTTGCATTGATTATGTTCTTCACT
TTCTTCTATACTTCGCTCGTTTTTGATTCCAAGGAAACGGCTGAGATGTTGAAGAAAAACTCTGGGTTTATTCCTGGAAA
GCGGCCTGGTAAGAGTACAATGGAGTACTTTGATCAGGTGATACGACGGTTAACGGTTATAGGGGCTGTATATCTTTCTG
TGGTCTGTGTAGTTCCGGAGGTAGTGCGGCACTATTGCGCGGTATCGTTTACTCTTGGAGGTACTAGCTTCTTGATTATT
GTCAATGTCATTAATGATACGTTTTCTCAGGTACAGACTCAGATATATTCTGGAAGGTATAGTGCGTTGATGAAGAAGTC
AGAGCTATGGAAAAAGAACAGGTAA

Upstream 100 bases:

>100_bases
AATTAGGATCAAAAGTTGATATATACTACGATGCGATTTCACGTTCTGCTGAGAGTAAGGTGTCTTTGTTAGGCGATTAA
GTTTTGCAGGAGGGTGCGAG

Downstream 100 bases:

>100_bases
ATTTACTTATTTTTGGTGCTCCTGGTTCTGGAAAGGGGACGCAAGCGCGTTTGCTGGGTGAATATCTGAAGGGGCTTGAA
GTTATCTCCATGGGAGATTT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MSAASLGSRVGLLKRFGFTLFALIVYRLGTYIPIPGINLGVIGEIVSGHTTGVLGIFNVFSGGALGRMTIFALNVMPYIV
SSIMVQLLSVAVPALNEMRQEGELGRAKINSYTRYLTVVFCIVQGLMILLGLERMNTAEVMVVLDPGLTFRVVGISSMLA
GTMFLLWLGERINLKGIGNGISLIIFVGIISELPSSLSSVFMLGKRGELSGFAVFLVMASFLALFLLIIFFERSYRKVLV
QYPKRQVGGRFYNSDSSYMPLKINISGVIPPIFANALLLSLMTLAKFSAGSSWSDFVLRYFHTESVLYIVVYVALIMFFT
FFYTSLVFDSKETAEMLKKNSGFIPGKRPGKSTMEYFDQVIRRLTVIGAVYLSVVCVVPEVVRHYCAVSFTLGGTSFLII
VNVINDTFSQVQTQIYSGRYSALMKKSELWKKNR

Sequences:

>Translated_434_residues
MSAASLGSRVGLLKRFGFTLFALIVYRLGTYIPIPGINLGVIGEIVSGHTTGVLGIFNVFSGGALGRMTIFALNVMPYIV
SSIMVQLLSVAVPALNEMRQEGELGRAKINSYTRYLTVVFCIVQGLMILLGLERMNTAEVMVVLDPGLTFRVVGISSMLA
GTMFLLWLGERINLKGIGNGISLIIFVGIISELPSSLSSVFMLGKRGELSGFAVFLVMASFLALFLLIIFFERSYRKVLV
QYPKRQVGGRFYNSDSSYMPLKINISGVIPPIFANALLLSLMTLAKFSAGSSWSDFVLRYFHTESVLYIVVYVALIMFFT
FFYTSLVFDSKETAEMLKKNSGFIPGKRPGKSTMEYFDQVIRRLTVIGAVYLSVVCVVPEVVRHYCAVSFTLGGTSFLII
VNVINDTFSQVQTQIYSGRYSALMKKSELWKKNR
>Mature_433_residues
SAASLGSRVGLLKRFGFTLFALIVYRLGTYIPIPGINLGVIGEIVSGHTTGVLGIFNVFSGGALGRMTIFALNVMPYIVS
SIMVQLLSVAVPALNEMRQEGELGRAKINSYTRYLTVVFCIVQGLMILLGLERMNTAEVMVVLDPGLTFRVVGISSMLAG
TMFLLWLGERINLKGIGNGISLIIFVGIISELPSSLSSVFMLGKRGELSGFAVFLVMASFLALFLLIIFFERSYRKVLVQ
YPKRQVGGRFYNSDSSYMPLKINISGVIPPIFANALLLSLMTLAKFSAGSSWSDFVLRYFHTESVLYIVVYVALIMFFTF
FYTSLVFDSKETAEMLKKNSGFIPGKRPGKSTMEYFDQVIRRLTVIGAVYLSVVCVVPEVVRHYCAVSFTLGGTSFLIIV
NVINDTFSQVQTQIYSGRYSALMKKSELWKKNR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=421, Percent_Identity=44.1805225653207, Blast_Score=342, Evalue=3e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48032; Mature: 47901

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAASLGSRVGLLKRFGFTLFALIVYRLGTYIPIPGINLGVIGEIVSGHTTGVLGIFNVF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
SGGALGRMTIFALNVMPYIVSSIMVQLLSVAVPALNEMRQEGELGRAKINSYTRYLTVVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
CIVQGLMILLGLERMNTAEVMVVLDPGLTFRVVGISSMLAGTMFLLWLGERINLKGIGNG
HHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEECCCH
ISLIIFVGIISELPSSLSSVFMLGKRGELSGFAVFLVMASFLALFLLIIFFERSYRKVLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYPKRQVGGRFYNSDSSYMPLKINISGVIPPIFANALLLSLMTLAKFSAGSSWSDFVLRY
HCCHHHHCCEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
FHTESVLYIVVYVALIMFFTFFYTSLVFDSKETAEMLKKNSGFIPGKRPGKSTMEYFDQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
IRRLTVIGAVYLSVVCVVPEVVRHYCAVSFTLGGTSFLIIVNVINDTFSQVQTQIYSGRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEHHHHHHHHHHHHHHHHCCHH
SALMKKSELWKKNR
HHHHHHHHHHCCCC
>Mature Secondary Structure 
SAASLGSRVGLLKRFGFTLFALIVYRLGTYIPIPGINLGVIGEIVSGHTTGVLGIFNVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
SGGALGRMTIFALNVMPYIVSSIMVQLLSVAVPALNEMRQEGELGRAKINSYTRYLTVVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
CIVQGLMILLGLERMNTAEVMVVLDPGLTFRVVGISSMLAGTMFLLWLGERINLKGIGNG
HHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEECCCH
ISLIIFVGIISELPSSLSSVFMLGKRGELSGFAVFLVMASFLALFLLIIFFERSYRKVLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYPKRQVGGRFYNSDSSYMPLKINISGVIPPIFANALLLSLMTLAKFSAGSSWSDFVLRY
HCCHHHHCCEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
FHTESVLYIVVYVALIMFFTFFYTSLVFDSKETAEMLKKNSGFIPGKRPGKSTMEYFDQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
IRRLTVIGAVYLSVVCVVPEVVRHYCAVSFTLGGTSFLIIVNVINDTFSQVQTQIYSGRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEHHHHHHHHHHHHHHHHCCHH
SALMKKSELWKKNR
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA