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The map label for this gene is sdhC [H]

Identifier: 88607062

GI number: 88607062

Start: 1056936

End: 1057319

Strand: Reverse

Name: sdhC [H]

Synonym: APH_0999

Alternate gene names: 88607062

Gene position: 1057319-1056936 (Counterclockwise)

Preceding gene: 88607012

Following gene: 88607526

Centisome position: 71.86

GC content: 46.09

Gene sequence:

>384_bases
GTGTCGAGGTCTAGGCCTCTGTCTCCGCATCTTAGTGTCTATAAGCTGCCGATAACGGCGTGGCTATCGATTACGCACAG
AATCACTGGTGTCCTGCTATTGATGGGGCTGACTCTCTTTACATGGTTATTGATTTCTTTACATTGGACATCTGGTCAGC
TGTGGGGTTTGTTAGACTCCTGGATAGGTGTACTGTTGGTAAAGGTGATAATAGGGGGCTGTATTGCTGCGCTGTGTTAC
CACTATTATAACGGGATTCGGCATTTATTCTGGGATTGCGGAATTGGCTTTGGTAAATCTGAGGCTACTTTCAGTGGTTG
GTTGATGTTAGGTTTTGCGGTGACCTCGTTGATCGGGCTGGGTTTTATAGGTTTCTTCAGTTAA

Upstream 100 bases:

>100_bases
CTCCTTTAGGCTTTTTACTGAGTATTCTATCTTATGGTAGTTTGTCGGTAAATGTGCCGCCGTCTTTATTTCTATTGTGA
ATTAACCGGAGGCTACTATA

Downstream 100 bases:

>100_bases
TATATGTCAGGAAAGAGTATTTTACACTGGTGGATGCAGCGGATGACTGCGGTGGTAATGCTGCCGGTTCCAATATTCCT
TGTGAAGGCGTTATTAGTTT

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MSRSRPLSPHLSVYKLPITAWLSITHRITGVLLLMGLTLFTWLLISLHWTSGQLWGLLDSWIGVLLVKVIIGGCIAALCY
HYYNGIRHLFWDCGIGFGKSEATFSGWLMLGFAVTSLIGLGFIGFFS

Sequences:

>Translated_127_residues
MSRSRPLSPHLSVYKLPITAWLSITHRITGVLLLMGLTLFTWLLISLHWTSGQLWGLLDSWIGVLLVKVIIGGCIAALCY
HYYNGIRHLFWDCGIGFGKSEATFSGWLMLGFAVTSLIGLGFIGFFS
>Mature_126_residues
SRSRPLSPHLSVYKLPITAWLSITHRITGVLLLMGLTLFTWLLISLHWTSGQLWGLLDSWIGVLLVKVIIGGCIAALCYH
YYNGIRHLFWDCGIGFGKSEATFSGWLMLGFAVTSLIGLGFIGFFS

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=106, Percent_Identity=33.9622641509434, Blast_Score=61, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323765, Length=99, Percent_Identity=36.3636363636364, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14120; Mature: 13989

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSRPLSPHLSVYKLPITAWLSITHRITGVLLLMGLTLFTWLLISLHWTSGQLWGLLDS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
WIGVLLVKVIIGGCIAALCYHYYNGIRHLFWDCGIGFGKSEATFSGWLMLGFAVTSLIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
GFIGFFS
HHHHHCC
>Mature Secondary Structure 
SRSRPLSPHLSVYKLPITAWLSITHRITGVLLLMGLTLFTWLLISLHWTSGQLWGLLDS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
WIGVLLVKVIIGGCIAALCYHYYNGIRHLFWDCGIGFGKSEATFSGWLMLGFAVTSLIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
GFIGFFS
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA