Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200868
Identifier: 87200868
GI number: 87200868
Start: 3079463
End: 3080221
Strand: Direct
Name: 87200868
Synonym: Saro_2855
Alternate gene names: NA
Gene position: 3079463-3080221 (Clockwise)
Preceding gene: 87200867
Following gene: 87200869
Centisome position: 86.46
GC content: 72.07
Gene sequence:
>759_bases ATGCTTGACTGGCTGCGCCGTGCGGACACCAGGGCGAAGGAGCCCGCACGGCCGCGAAAGGTCGCCGCGCGGACCATCGT GGTGGACGGGCGCGACCTGCCGCTGGTGATCCGCAAGCTGGGCCACGCCCGGCGCATGACCCTGCGCCTTGCCCCGGACG GCAGCGAGGCGCGCGTCTCGATCCCGGCATGGGGCCGGGTCGGCGACGCGGAAGCCTTTGCGCGGGACCGGGCCGACTGG CTTGCGGGGCAGCTTGCCCGGTTGCCCGAATCGCGCCAGATCGCGCCCGACGCCACCCTGCCCTATCGCGGCGCGACGCT TCAGATCGACTGGCAGGCCGCCGCGCGGCGCAAGCCGGTCGTCGAGGGCGACCGCGTGGTCGTGGGCGGTCCGCTCGACG GATTGGGCGGGCGCATGCAGCGCTGGCTGGAAGCCGAGGCGCTGGCGCTGTCGACAGCGGACCTTGGCCACTACTGCGCG CGGGCCGGGCAGGAAGTGCCTCGCCTTACGCTGTCGCGGGCGCAGCGGCGCTGGGGGAGCTGCGCAGCGGACGGATCGAT CCGCATCAACTGGCGGCTGGTGATGGCGCCCGACTTCGTGCGCCGCTCGGTCGTGGCGCACGAAGTGGCGCACATGAAGC ACTTCGACCACAGCCCTGCGTTCCACACGCACCTCGACGAACTCTACGAAGGCGAGATCGACACGGCGAACCGCTGGCTC AAGCGGCACGGGCGCACGCTTTACGTGCTGTTCGGGTGA
Upstream 100 bases:
>100_bases GTGGGCAAGGCAGTGAGCGAAACGATCGCGGGGCCGCTGGACGAGCACATCGTTCCGGCCGACCACTTCGACGGGCGACC CCGCCGGGGCGGAGGCGGCA
Downstream 100 bases:
>100_bases TGGGTGGCACTTTGATGGCCAAGGCCCTATCTAGGCGCGCATGAAAGCGTTCTTCCGCAATGTCTCCCCTCGCCGCGCGG TCGTCGACCTGTGGGAAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: Metal-Dependent Hydrolase; Zinc Metallopeptidase; Zinc Metallopeptidases-Like Protein; Zinc Metallopeptidase-Like Protein; Hydrolase; Zinc Metallopeptidase Protein
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MLDWLRRADTRAKEPARPRKVAARTIVVDGRDLPLVIRKLGHARRMTLRLAPDGSEARVSIPAWGRVGDAEAFARDRADW LAGQLARLPESRQIAPDATLPYRGATLQIDWQAAARRKPVVEGDRVVVGGPLDGLGGRMQRWLEAEALALSTADLGHYCA RAGQEVPRLTLSRAQRRWGSCAADGSIRINWRLVMAPDFVRRSVVAHEVAHMKHFDHSPAFHTHLDELYEGEIDTANRWL KRHGRTLYVLFG
Sequences:
>Translated_252_residues MLDWLRRADTRAKEPARPRKVAARTIVVDGRDLPLVIRKLGHARRMTLRLAPDGSEARVSIPAWGRVGDAEAFARDRADW LAGQLARLPESRQIAPDATLPYRGATLQIDWQAAARRKPVVEGDRVVVGGPLDGLGGRMQRWLEAEALALSTADLGHYCA RAGQEVPRLTLSRAQRRWGSCAADGSIRINWRLVMAPDFVRRSVVAHEVAHMKHFDHSPAFHTHLDELYEGEIDTANRWL KRHGRTLYVLFG >Mature_252_residues MLDWLRRADTRAKEPARPRKVAARTIVVDGRDLPLVIRKLGHARRMTLRLAPDGSEARVSIPAWGRVGDAEAFARDRADW LAGQLARLPESRQIAPDATLPYRGATLQIDWQAAARRKPVVEGDRVVVGGPLDGLGGRMQRWLEAEALALSTADLGHYCA RAGQEVPRLTLSRAQRRWGSCAADGSIRINWRLVMAPDFVRRSVVAHEVAHMKHFDHSPAFHTHLDELYEGEIDTANRWL KRHGRTLYVLFG
Specific function: Unknown
COG id: COG1451
COG function: function code R; Predicted metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28293; Mature: 28293
Theoretical pI: Translated: 10.96; Mature: 10.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDWLRRADTRAKEPARPRKVAARTIVVDGRDLPLVIRKLGHARRMTLRLAPDGSEARVS CCHHHHHHCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHCCCCEEEEEEECCCCCCCEEE IPAWGRVGDAEAFARDRADWLAGQLARLPESRQIAPDATLPYRGATLQIDWQAAARRKPV CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHCCCCC VEGDRVVVGGPLDGLGGRMQRWLEAEALALSTADLGHYCARAGQEVPRLTLSRAQRRWGS CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC CAADGSIRINWRLVMAPDFVRRSVVAHEVAHMKHFDHSPAFHTHLDELYEGEIDTANRWL CCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHH KRHGRTLYVLFG HHCCCEEEEEEC >Mature Secondary Structure MLDWLRRADTRAKEPARPRKVAARTIVVDGRDLPLVIRKLGHARRMTLRLAPDGSEARVS CCHHHHHHCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHCCCCEEEEEEECCCCCCCEEE IPAWGRVGDAEAFARDRADWLAGQLARLPESRQIAPDATLPYRGATLQIDWQAAARRKPV CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHCCCCC VEGDRVVVGGPLDGLGGRMQRWLEAEALALSTADLGHYCARAGQEVPRLTLSRAQRRWGS CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC CAADGSIRINWRLVMAPDFVRRSVVAHEVAHMKHFDHSPAFHTHLDELYEGEIDTANRWL CCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHH KRHGRTLYVLFG HHCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA