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The map label for this gene is dapD

Identifier: 87199852

GI number: 87199852

Start: 1933469

End: 1934308

Strand: Reverse

Name: dapD

Synonym: Saro_1835

Alternate gene names: 87199852

Gene position: 1934308-1933469 (Counterclockwise)

Preceding gene: 87199853

Following gene: 87199851

Centisome position: 54.31

GC content: 67.62

Gene sequence:

>840_bases
ATGACCGCCGCCTCGCTCGAAGCCGCAATCGAAGCCGCTTGGGAAGACCGTGCCAACGTCACCCCGGCCAGCGATGCCGT
TCGCGAAGTGGTCGAGGCCGCGCTCGAGCTGCTCGACAGCGGCAAGGCTCGCGTCGCCGAGAAGATAGACGGCCAGTGGC
AGGTCAACCAGTGGCTGAAGAAGGCCGTGCTCCTCTCGTTCCGCCTCAACGACAATGCCGTGATCGATCATGGCGCGGGC
GGCGCGCCTGCATTCGACAAGGTTCCGTCCAAGTTCTCCGGCTGGGGCGAGAACCGCTTCCGCGAGGCCGGCTTCCGCGT
CGTTCCCGGCGCTGTCGCGCGCAAGGGCGCGCACATCGGCAAGGGCGTGGTCCTGATGCCCAGCTTCGTGAACATCGGCG
CTTTCGTCGACGAGGGCACGATGGTCGACACCTGGGCGACCGTCGGCTCCTGCGCGCAGATCGGCAAGAACGTCCACATC
TCGGGCGGTGCAGGCATCGGCGGCGTCCTTGAACCGCTCCAGGCCGGCCCCGTCATCATCGAGGACGGCGCGTTCATCGG
CGCGCGTTCGGAAGTGGCCGAAGGCGTGATCGTGGGCGAAGGCGCCGTGCTGTCGATGGGCGTCTATCTCGGCGCTTCGA
CCAAGATCGTCGACCGCCAGACCGGCGAAGTCCACATCGGCCGCGTTCCGCCCTACGCTGTCGTCGTTCCCGGCGCGATG
CCCGGCAAGCCCCTGCCCGACGGCACGCCCGGCCCCTCGCTCTACTGCGCCGTGATCGTCAAGACGGTCGATGCCCAGAC
CCGCAGCAAGACCGGAATCAACGAACTCCTGCGCGATTGA

Upstream 100 bases:

>100_bases
GCCTGGCTCGATCATACGATTGCGGCGCTTGCCGATATGCCCCCGCTGGGCTAGGCGGCGCGCAATTTTGTTCCAGACCG
ATCCCCAAGGGAGAAACGCC

Downstream 100 bases:

>100_bases
CGGCCAGCCCGGGCACTGCCCATCCGGGCAGTCTCCGGAACATGGCGCTTCCCCATGCGTAGATCCGGCAAGCACCGGAC
TATTTCCGAAGGAGAAGCGC

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MTAASLEAAIEAAWEDRANVTPASDAVREVVEAALELLDSGKARVAEKIDGQWQVNQWLKKAVLLSFRLNDNAVIDHGAG
GAPAFDKVPSKFSGWGENRFREAGFRVVPGAVARKGAHIGKGVVLMPSFVNIGAFVDEGTMVDTWATVGSCAQIGKNVHI
SGGAGIGGVLEPLQAGPVIIEDGAFIGARSEVAEGVIVGEGAVLSMGVYLGASTKIVDRQTGEVHIGRVPPYAVVVPGAM
PGKPLPDGTPGPSLYCAVIVKTVDAQTRSKTGINELLRD

Sequences:

>Translated_279_residues
MTAASLEAAIEAAWEDRANVTPASDAVREVVEAALELLDSGKARVAEKIDGQWQVNQWLKKAVLLSFRLNDNAVIDHGAG
GAPAFDKVPSKFSGWGENRFREAGFRVVPGAVARKGAHIGKGVVLMPSFVNIGAFVDEGTMVDTWATVGSCAQIGKNVHI
SGGAGIGGVLEPLQAGPVIIEDGAFIGARSEVAEGVIVGEGAVLSMGVYLGASTKIVDRQTGEVHIGRVPPYAVVVPGAM
PGKPLPDGTPGPSLYCAVIVKTVDAQTRSKTGINELLRD
>Mature_278_residues
TAASLEAAIEAAWEDRANVTPASDAVREVVEAALELLDSGKARVAEKIDGQWQVNQWLKKAVLLSFRLNDNAVIDHGAGG
APAFDKVPSKFSGWGENRFREAGFRVVPGAVARKGAHIGKGVVLMPSFVNIGAFVDEGTMVDTWATVGSCAQIGKNVHIS
GGAGIGGVLEPLQAGPVIIEDGAFIGARSEVAEGVIVGEGAVLSMGVYLGASTKIVDRQTGEVHIGRVPPYAVVVPGAMP
GKPLPDGTPGPSLYCAVIVKTVDAQTRSKTGINELLRD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family

Homologues:

Organism=Escherichia coli, GI1786362, Length=276, Percent_Identity=67.3913043478261, Blast_Score=338, Evalue=2e-94,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): DAPD_NOVAD (Q2G798)

Other databases:

- EMBL:   CP000248
- RefSeq:   YP_497109.1
- ProteinModelPortal:   Q2G798
- SMR:   Q2G798
- STRING:   Q2G798
- GeneID:   3918395
- GenomeReviews:   CP000248_GR
- KEGG:   nar:Saro_1835
- NMPDR:   fig|48935.1.peg.603
- eggNOG:   COG2171
- HOGENOM:   HBG704071
- OMA:   IMPSFIN
- PhylomeDB:   Q2G798
- ProtClustDB:   PRK11830
- BioCyc:   NARO279238:SARO_1835-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00811
- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004
- Gene3D:   G3DSA:1.10.166.10
- TIGRFAMs:   TIGR00965

Pfam domain/function: SSF51161 Trimer_LpxA_like

EC number: =2.3.1.117

Molecular weight: Translated: 28944; Mature: 28813

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: BINDING 106-106 BINDING 143-143

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAASLEAAIEAAWEDRANVTPASDAVREVVEAALELLDSGKARVAEKIDGQWQVNQWLK
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHH
KAVLLSFRLNDNAVIDHGAGGAPAFDKVPSKFSGWGENRFREAGFRVVPGAVARKGAHIG
HHHHEEEEECCCEEEECCCCCCCCHHHCCCHHCCCCCHHHHHCCCEECCHHHHHCCCCCC
KGVVLMPSFVNIGAFVDEGTMVDTWATVGSCAQIGKNVHISGGAGIGGVLEPLQAGPVII
CCEEECCCHHCCCEEECCCCEEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCEEE
EDGAFIGARSEVAEGVIVGEGAVLSMGVYLGASTKIVDRQTGEVHIGRVPPYAVVVPGAM
ECCCEECCHHHHHCCEEECCCCEEEEHEEECCCCEEEECCCCCEEECCCCCEEEEECCCC
PGKPLPDGTPGPSLYCAVIVKTVDAQTRSKTGINELLRD
CCCCCCCCCCCCHHEEEHHHHHHCCHHHCCCCHHHHHCC
>Mature Secondary Structure 
TAASLEAAIEAAWEDRANVTPASDAVREVVEAALELLDSGKARVAEKIDGQWQVNQWLK
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHH
KAVLLSFRLNDNAVIDHGAGGAPAFDKVPSKFSGWGENRFREAGFRVVPGAVARKGAHIG
HHHHEEEEECCCEEEECCCCCCCCHHHCCCHHCCCCCHHHHHCCCEECCHHHHHCCCCCC
KGVVLMPSFVNIGAFVDEGTMVDTWATVGSCAQIGKNVHISGGAGIGGVLEPLQAGPVII
CCEEECCCHHCCCEEECCCCEEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCEEE
EDGAFIGARSEVAEGVIVGEGAVLSMGVYLGASTKIVDRQTGEVHIGRVPPYAVVVPGAM
ECCCEECCHHHHHCCEEECCCCEEEEHEEECCCCEEEECCCCCEEECCCCCEEEEECCCC
PGKPLPDGTPGPSLYCAVIVKTVDAQTRSKTGINELLRD
CCCCCCCCCCCCHHEEEHHHHHHCCHHHCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA