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The map label for this gene is abgR [H]

Identifier: 87199695

GI number: 87199695

Start: 1762454

End: 1763410

Strand: Reverse

Name: abgR [H]

Synonym: Saro_1678

Alternate gene names: 87199695

Gene position: 1763410-1762454 (Counterclockwise)

Preceding gene: 87199699

Following gene: 87199694

Centisome position: 49.51

GC content: 66.98

Gene sequence:

>957_bases
ATGAACTGCCGCAGCCTTAGAAACAATTGCAATCTTGGCGGAAAGCCATACGCCTTGCGCATGGATTTCGACGAACGCCA
GCTCCGCGCATTCATCGCCATTGCCGATACCGGCAGCCTCGGCCGCGCCGCGCGAGTTGTGAACCTGACCCAGCCCTCGC
TCAGCCGCCTCGTCCAGGGCATCGAGGAAAGGCTTGGCCATCGCCTGTTCGATCGCGGCGGCAAGGGCATGGCCTTGACC
GACGCTGGCCGGCTCCTTCTCCCACACGCCCGTCACCTCGTTGCGGAGATGCAGAACACGCGCGACGAGCTTGCCGCCCT
GCGCGGCCTGCGGCGCGGGACGGTGCGCATCGGCGCGGTCGCGGCGGTGCTGCGCACGCTCGTCGCCAGCGCAATCGGCA
GCGTGCTGGTCGAAACACCCGATCTCGCGTTCGAGCTGGTCGAAGGCGTCGACGGTGAACTGCTCGATGCGCTGCTGACG
CGCAGGATCGACCTTGCCGTCTCCTCGCAACCGCTGGACCACGACGAAGTGGTTCCGATCGGCGAATGCACCTATCGTGA
CAGCTTCGCCGTCTTCTGCGCCGCCTCGCACACCCTACCGCCCCGCCCGACGCTGGCGCAGGCGATGACGCGGGGCTGGG
TCATGCCGGGCCATGCCTTCACGCCGCGCGGCACGTTCGAGGAAATCGTCCGGCGCCATAGCCTCACACCGCGCGTCGTC
GTCGAATGCGGTTCCGTCGAAGCCATGATCGCCGTATCCGCCAGCAGCGAACTGCTCTGCTGGTTGCCGGAGCCGCTCCT
CGCCCCGCACCTTGCCAGCGGCGCGATGCGGAAGCTCGACATTGCCGAGCTCGCGCTGCAGCGCCGCTTCATCCTGCATC
GGCGCAAGTCCGGCCTTCTACCGGATGCGGCGAGCCAGTTCGTACGTCATTTTCCGCTTGTCGGCAGCGGGGCTTGA

Upstream 100 bases:

>100_bases
TTGCCGAAAACGGTAGTCATGCCGAGTTCGCGCAGAAGGTCGATGGTAACGTGACGGACGGTCGACATGATCTCTCCGGG
CATATGCTTGTCAACCGAGG

Downstream 100 bases:

>100_bases
CCGACCAATCCACCCGCCGGGATACTCGCGCGCATGTACGAGCGAGGGACTATCCAGATGGAGCGCGTGGTTATCGTCGG
TGCCGGCGCGATGGGCTGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MNCRSLRNNCNLGGKPYALRMDFDERQLRAFIAIADTGSLGRAARVVNLTQPSLSRLVQGIEERLGHRLFDRGGKGMALT
DAGRLLLPHARHLVAEMQNTRDELAALRGLRRGTVRIGAVAAVLRTLVASAIGSVLVETPDLAFELVEGVDGELLDALLT
RRIDLAVSSQPLDHDEVVPIGECTYRDSFAVFCAASHTLPPRPTLAQAMTRGWVMPGHAFTPRGTFEEIVRRHSLTPRVV
VECGSVEAMIAVSASSELLCWLPEPLLAPHLASGAMRKLDIAELALQRRFILHRRKSGLLPDAASQFVRHFPLVGSGA

Sequences:

>Translated_318_residues
MNCRSLRNNCNLGGKPYALRMDFDERQLRAFIAIADTGSLGRAARVVNLTQPSLSRLVQGIEERLGHRLFDRGGKGMALT
DAGRLLLPHARHLVAEMQNTRDELAALRGLRRGTVRIGAVAAVLRTLVASAIGSVLVETPDLAFELVEGVDGELLDALLT
RRIDLAVSSQPLDHDEVVPIGECTYRDSFAVFCAASHTLPPRPTLAQAMTRGWVMPGHAFTPRGTFEEIVRRHSLTPRVV
VECGSVEAMIAVSASSELLCWLPEPLLAPHLASGAMRKLDIAELALQRRFILHRRKSGLLPDAASQFVRHFPLVGSGA
>Mature_318_residues
MNCRSLRNNCNLGGKPYALRMDFDERQLRAFIAIADTGSLGRAARVVNLTQPSLSRLVQGIEERLGHRLFDRGGKGMALT
DAGRLLLPHARHLVAEMQNTRDELAALRGLRRGTVRIGAVAAVLRTLVASAIGSVLVETPDLAFELVEGVDGELLDALLT
RRIDLAVSSQPLDHDEVVPIGECTYRDSFAVFCAASHTLPPRPTLAQAMTRGWVMPGHAFTPRGTFEEIVRRHSLTPRVV
VECGSVEAMIAVSASSELLCWLPEPLLAPHLASGAMRKLDIAELALQRRFILHRRKSGLLPDAASQFVRHFPLVGSGA

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=294, Percent_Identity=29.5918367346939, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI157672245, Length=285, Percent_Identity=25.9649122807018, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI145693105, Length=299, Percent_Identity=23.7458193979933, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789506, Length=251, Percent_Identity=24.3027888446215, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081904, Length=142, Percent_Identity=32.3943661971831, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788481, Length=230, Percent_Identity=27.3913043478261, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788297, Length=247, Percent_Identity=26.3157894736842, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787879, Length=278, Percent_Identity=25.8992805755396, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789639, Length=125, Percent_Identity=28.8, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI48994962, Length=157, Percent_Identity=31.2101910828025, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789440, Length=193, Percent_Identity=26.9430051813472, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=23.448275862069, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI2367136, Length=139, Percent_Identity=29.4964028776978, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786401, Length=147, Percent_Identity=25.8503401360544, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34653; Mature: 34653

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCRSLRNNCNLGGKPYALRMDFDERQLRAFIAIADTGSLGRAARVVNLTQPSLSRLVQG
CCCHHHHCCCCCCCCCEEEEECCCHHHEEEEEEEECCCCCCCHHHEEECCCHHHHHHHHH
IEERLGHRLFDRGGKGMALTDAGRLLLPHARHLVAEMQNTRDELAALRGLRRGTVRIGAV
HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AAVLRTLVASAIGSVLVETPDLAFELVEGVDGELLDALLTRRIDLAVSSQPLDHDEVVPI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCC
GECTYRDSFAVFCAASHTLPPRPTLAQAMTRGWVMPGHAFTPRGTFEEIVRRHSLTPRVV
CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEE
VECGSVEAMIAVSASSELLCWLPEPLLAPHLASGAMRKLDIAELALQRRFILHRRKSGLL
EECCCEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDAASQFVRHFPLVGSGA
CHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNCRSLRNNCNLGGKPYALRMDFDERQLRAFIAIADTGSLGRAARVVNLTQPSLSRLVQG
CCCHHHHCCCCCCCCCEEEEECCCHHHEEEEEEEECCCCCCCHHHEEECCCHHHHHHHHH
IEERLGHRLFDRGGKGMALTDAGRLLLPHARHLVAEMQNTRDELAALRGLRRGTVRIGAV
HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AAVLRTLVASAIGSVLVETPDLAFELVEGVDGELLDALLTRRIDLAVSSQPLDHDEVVPI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCC
GECTYRDSFAVFCAASHTLPPRPTLAQAMTRGWVMPGHAFTPRGTFEEIVRRHSLTPRVV
CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEE
VECGSVEAMIAVSASSELLCWLPEPLLAPHLASGAMRKLDIAELALQRRFILHRRKSGLL
EECCCEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDAASQFVRHFPLVGSGA
CHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]