Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is glgP [H]
Identifier: 87199676
GI number: 87199676
Start: 1737715
End: 1740138
Strand: Reverse
Name: glgP [H]
Synonym: Saro_1659
Alternate gene names: 87199676
Gene position: 1740138-1737715 (Counterclockwise)
Preceding gene: 87199678
Following gene: 87199675
Centisome position: 48.86
GC content: 64.03
Gene sequence:
>2424_bases ATGAGCCTCGACAAGAATTCCAGGGCCGCAGAGATCGATGCGCAGATCATCGACGTCCTGCGCCACCGCGTCGGCAAGGA CGAGCGCGCGGCAAAGCCGCACGACTGGTACACCGCAACGGTCCTCACCCTGCGCGATGCGATCATCGACCGCTGGATGG AATCCACCCGCAAGACTTATGCGGAAAGCGGAAAGCGGGTCTATTACCTCAGCCTCGAGTTCCTGATCGGCCGGCTGCTG CGCGATGCCCTGTCCAACATGGGCCTGACGCGCGACATGGAACTGGCCCTGCGCGAACACGGCTTCGACCTTTCCGCGCT GGAAGACCTCGAGCCTGATGCCGCGCTCGGCAATGGCGGGCTCGGCCGCCTCGCCGCCTGCTTCATGGAAAGCCTCGCCA GCCTCGACATCCCCGCTTACGGCTACGGCATCCGCTATGTGAACGGCATGTTCCGCCAGCGGATCGACGATGGGTGGCAG GTCGAACTGCCCGAAACCTGGCTGTCGCACGGCAACCCATGGGAATTCGATCGCCGCGAAAGCGCCTACATCATCGGCTT CGGCGGCGAAGTGGTGGAGAAGGCCGACGGCGTCGAATGGCGCCCGGCCGAAAAGGTCGAGGCGAGCGCGGTCGACACCC CGGTCGTCGGCTGGCGCGGCAAGCGCGTCAACACCTTGCGCCTGTGGACAGCACACGCCTTCGATCCGCTGCGCCTCGAC GCCTTCAACGCGGGCGACCACTTCGGCGCGCTTGCCGAACAGGTCCGCGCCGATAGCCTCGTGCGCGTGCTCTATCCGGC GGACTCTACCCCCGCCGGGCAGGAACTGCGCCTCAGGCAGGAGTATTTCTTCACCTCCGCGTCGATCCAGGACATCGTGC GCCGCCACGTCCAGTACAATGGCGACATCCGCACCCTGCCAGAAAAGGCCGCGATCCAGCTCAACGATACGCACCCGGCC GTTGCCGTTGCCGAACTGATGCGCCTGATGGTCGATGTCCACGGCCTGGAATTCAACGAGGCGTGGGAAGTGACCAAGGC GACGGTCGGCTACACCAACCACACGCTCCTGCCCGAAGCGCTCGAATCCTGGCCCCTGCCCCTGTTCGAACGCCTGCTCC CGCGCCACATGCAGATCGTCTACGCCATCAACAGCCGTGTCCTGCGCGAAGCGCGCAAGGCGGGCCTCGATGACGCCGCG ATCTCGGCGATCAGCCTGATCGACGAAGGCGGCGAACGCCGCGTGCGCATGGCCAATCTCGCTTTCTCGGGCGCGCACAG CGTCAATGGCGTGGCAGCGCTCCATACCGAGCTGATGAAGACCACCGTCTTTTCAGACCTGCACAAGCTCTACCCGGCGC GCATCAACAACAAGACCAACGGCGTTACCCCGCGCCGGTGGTTGCAGCAGTGCAATCCCGGCCTGACCTCGGTCCTGAAG GACGCGATCGGCGACTGTTTTCTTGACGACGCCGAAAAGCTCTCCGATCTCAACGCGCTGGCCGACGATCCCGCGCTGGG AGAGCGGATTGCAGAGGTCAAGCGCACCAACAAGATCGCACTGGCAAAGCACGTCAAGGAACTGATGGGCATCCGCCTCG ATCCCGACGCGCTGTTCGACGTCCAGATCAAGCGCATCCACGAATACAAGCGCCAGCTGCTCAACCTGATAGAGACCGTC GCGCTCTACGACCAGATCCGCAGCCACCCTGAACGCGACTGGGTGCCGCGCGTAAAGATCTTCGGCGGCAAGGCCGCATC GAGCTATCACAACGCCAAGCTCATCATCAAACTGGCCAACGACATCGCCCGCCGCGTCAACTCCGACCCTTCGGTCGGCG GCCTGCTCAAGGTCGTGTTCGTGCCGAACTACAACGTCAGCCTGGCCGAGAAGATCATACCGGCGGCCGACCTTTCCGAA CAGATTTCCACCGCCGGCATGGAAGCTTCCGGCACCGGCAACATGAAGTTCGCCCTCAACGGTGCGCTCACCATCGGCAC GCTCGACGGCGCCAACATCGAGATCAAGGACCGCGTGGGCGACGCCAACATCGAGATTTTCGGCCTCACCGCGCAGGAGG TCGAGGACAAGCGCGCCAACGGCTACAACCCGCGCGAAGTGATCGAAAGCTCGCGCGAATTGCAGCAGGCCATCGCGGCA ATCGCCACCGGCGTCTTTTCGCCCGACGACCCGCAGCGCTATGCAGGCCTGATGGGCGGCATCTACGACCACGACTGGTT CATGGTCGCCGCTGATTTCGATGCCTACCACGCGGCGCAACGCAACATCGATCGCCGCTGGGAACAGCAGCCGTCGTGGC GCGCTTCGGCAATCCGCAACATTGCCAACGTAGGCTGGTTCTCGTCCGATCGCACGATCGGCGAATATGCCCGCGACATC TGGGGGGTCCGAGACCGAGCATGA
Upstream 100 bases:
>100_bases AAAGCAGGCAGGCGGTGATGAAGGGCCGGTACAACAGGGACCGGCGCGTGCGTGGCATGTCCATCGCCCGTTCCGGACAA GGCAGGGTGGGACGACCGGC
Downstream 100 bases:
>100_bases AACCACCGGCGAGCGCCATCGATGCCCTTCTGGACGGGACGCACGCCGATCCTTTCTCGCTTCTCGGCATCCACGAAGGA CCGGACGGCGCCTTCGCCCG
Product: glycogen/starch/alpha-glucan phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 807; Mature: 806
Protein sequence:
>807_residues MSLDKNSRAAEIDAQIIDVLRHRVGKDERAAKPHDWYTATVLTLRDAIIDRWMESTRKTYAESGKRVYYLSLEFLIGRLL RDALSNMGLTRDMELALREHGFDLSALEDLEPDAALGNGGLGRLAACFMESLASLDIPAYGYGIRYVNGMFRQRIDDGWQ VELPETWLSHGNPWEFDRRESAYIIGFGGEVVEKADGVEWRPAEKVEASAVDTPVVGWRGKRVNTLRLWTAHAFDPLRLD AFNAGDHFGALAEQVRADSLVRVLYPADSTPAGQELRLRQEYFFTSASIQDIVRRHVQYNGDIRTLPEKAAIQLNDTHPA VAVAELMRLMVDVHGLEFNEAWEVTKATVGYTNHTLLPEALESWPLPLFERLLPRHMQIVYAINSRVLREARKAGLDDAA ISAISLIDEGGERRVRMANLAFSGAHSVNGVAALHTELMKTTVFSDLHKLYPARINNKTNGVTPRRWLQQCNPGLTSVLK DAIGDCFLDDAEKLSDLNALADDPALGERIAEVKRTNKIALAKHVKELMGIRLDPDALFDVQIKRIHEYKRQLLNLIETV ALYDQIRSHPERDWVPRVKIFGGKAASSYHNAKLIIKLANDIARRVNSDPSVGGLLKVVFVPNYNVSLAEKIIPAADLSE QISTAGMEASGTGNMKFALNGALTIGTLDGANIEIKDRVGDANIEIFGLTAQEVEDKRANGYNPREVIESSRELQQAIAA IATGVFSPDDPQRYAGLMGGIYDHDWFMVAADFDAYHAAQRNIDRRWEQQPSWRASAIRNIANVGWFSSDRTIGEYARDI WGVRDRA
Sequences:
>Translated_807_residues MSLDKNSRAAEIDAQIIDVLRHRVGKDERAAKPHDWYTATVLTLRDAIIDRWMESTRKTYAESGKRVYYLSLEFLIGRLL RDALSNMGLTRDMELALREHGFDLSALEDLEPDAALGNGGLGRLAACFMESLASLDIPAYGYGIRYVNGMFRQRIDDGWQ VELPETWLSHGNPWEFDRRESAYIIGFGGEVVEKADGVEWRPAEKVEASAVDTPVVGWRGKRVNTLRLWTAHAFDPLRLD AFNAGDHFGALAEQVRADSLVRVLYPADSTPAGQELRLRQEYFFTSASIQDIVRRHVQYNGDIRTLPEKAAIQLNDTHPA VAVAELMRLMVDVHGLEFNEAWEVTKATVGYTNHTLLPEALESWPLPLFERLLPRHMQIVYAINSRVLREARKAGLDDAA ISAISLIDEGGERRVRMANLAFSGAHSVNGVAALHTELMKTTVFSDLHKLYPARINNKTNGVTPRRWLQQCNPGLTSVLK DAIGDCFLDDAEKLSDLNALADDPALGERIAEVKRTNKIALAKHVKELMGIRLDPDALFDVQIKRIHEYKRQLLNLIETV ALYDQIRSHPERDWVPRVKIFGGKAASSYHNAKLIIKLANDIARRVNSDPSVGGLLKVVFVPNYNVSLAEKIIPAADLSE QISTAGMEASGTGNMKFALNGALTIGTLDGANIEIKDRVGDANIEIFGLTAQEVEDKRANGYNPREVIESSRELQQAIAA IATGVFSPDDPQRYAGLMGGIYDHDWFMVAADFDAYHAAQRNIDRRWEQQPSWRASAIRNIANVGWFSSDRTIGEYARDI WGVRDRA >Mature_806_residues SLDKNSRAAEIDAQIIDVLRHRVGKDERAAKPHDWYTATVLTLRDAIIDRWMESTRKTYAESGKRVYYLSLEFLIGRLLR DALSNMGLTRDMELALREHGFDLSALEDLEPDAALGNGGLGRLAACFMESLASLDIPAYGYGIRYVNGMFRQRIDDGWQV ELPETWLSHGNPWEFDRRESAYIIGFGGEVVEKADGVEWRPAEKVEASAVDTPVVGWRGKRVNTLRLWTAHAFDPLRLDA FNAGDHFGALAEQVRADSLVRVLYPADSTPAGQELRLRQEYFFTSASIQDIVRRHVQYNGDIRTLPEKAAIQLNDTHPAV AVAELMRLMVDVHGLEFNEAWEVTKATVGYTNHTLLPEALESWPLPLFERLLPRHMQIVYAINSRVLREARKAGLDDAAI SAISLIDEGGERRVRMANLAFSGAHSVNGVAALHTELMKTTVFSDLHKLYPARINNKTNGVTPRRWLQQCNPGLTSVLKD AIGDCFLDDAEKLSDLNALADDPALGERIAEVKRTNKIALAKHVKELMGIRLDPDALFDVQIKRIHEYKRQLLNLIETVA LYDQIRSHPERDWVPRVKIFGGKAASSYHNAKLIIKLANDIARRVNSDPSVGGLLKVVFVPNYNVSLAEKIIPAADLSEQ ISTAGMEASGTGNMKFALNGALTIGTLDGANIEIKDRVGDANIEIFGLTAQEVEDKRANGYNPREVIESSRELQQAIAAI ATGVFSPDDPQRYAGLMGGIYDHDWFMVAADFDAYHAAQRNIDRRWEQQPSWRASAIRNIANVGWFSSDRTIGEYARDIW GVRDRA
Specific function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties [
COG id: COG0058
COG function: function code G; Glucan phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycogen phosphorylase family [H]
Homologues:
Organism=Homo sapiens, GI21361370, Length=804, Percent_Identity=48.2587064676617, Blast_Score=754, Evalue=0.0, Organism=Homo sapiens, GI5032009, Length=795, Percent_Identity=47.1698113207547, Blast_Score=741, Evalue=0.0, Organism=Homo sapiens, GI71037379, Length=804, Percent_Identity=46.3930348258707, Blast_Score=722, Evalue=0.0, Organism=Homo sapiens, GI255653002, Length=804, Percent_Identity=44.4029850746269, Blast_Score=672, Evalue=0.0, Organism=Homo sapiens, GI257900462, Length=662, Percent_Identity=47.1299093655589, Blast_Score=641, Evalue=0.0, Organism=Escherichia coli, GI2367228, Length=786, Percent_Identity=49.1094147582697, Blast_Score=773, Evalue=0.0, Organism=Escherichia coli, GI48994936, Length=743, Percent_Identity=45.4912516823688, Blast_Score=650, Evalue=0.0, Organism=Caenorhabditis elegans, GI17564550, Length=798, Percent_Identity=47.2431077694236, Blast_Score=748, Evalue=0.0, Organism=Caenorhabditis elegans, GI32566204, Length=798, Percent_Identity=47.2431077694236, Blast_Score=747, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6325418, Length=844, Percent_Identity=43.6018957345972, Blast_Score=648, Evalue=0.0, Organism=Drosophila melanogaster, GI78706832, Length=793, Percent_Identity=46.2799495586381, Blast_Score=737, Evalue=0.0, Organism=Drosophila melanogaster, GI24581010, Length=793, Percent_Identity=46.2799495586381, Blast_Score=737, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011833 - InterPro: IPR000811 [H]
Pfam domain/function: PF00343 Phosphorylase [H]
EC number: =2.4.1.1 [H]
Molecular weight: Translated: 90230; Mature: 90099
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: PS00102 PHOSPHORYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLDKNSRAAEIDAQIIDVLRHRVGKDERAAKPHDWYTATVLTLRDAIIDRWMESTRKTY CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AESGKRVYYLSLEFLIGRLLRDALSNMGLTRDMELALREHGFDLSALEDLEPDAALGNGG HHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCC LGRLAACFMESLASLDIPAYGYGIRYVNGMFRQRIDDGWQVELPETWLSHGNPWEFDRRE HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCCCCCC SAYIIGFGGEVVEKADGVEWRPAEKVEASAVDTPVVGWRGKRVNTLRLWTAHAFDPLRLD CEEEEECCHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEEE AFNAGDHFGALAEQVRADSLVRVLYPADSTPAGQELRLRQEYFFTSASIQDIVRRHVQYN EECCCCHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC GDIRTLPEKAAIQLNDTHPAVAVAELMRLMVDVHGLEFNEAWEVTKATVGYTNHTLLPEA CCEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEECCCCCCCCHHH LESWPLPLFERLLPRHMQIVYAINSRVLREARKAGLDDAAISAISLIDEGGERRVRMANL HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEHE AFSGAHSVNGVAALHTELMKTTVFSDLHKLYPARINNKTNGVTPRRWLQQCNPGLTSVLK EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHH DAIGDCFLDDAEKLSDLNALADDPALGERIAEVKRTNKIALAKHVKELMGIRLDPDALFD HHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHH VQIKRIHEYKRQLLNLIETVALYDQIRSHPERDWVPRVKIFGGKAASSYHNAKLIIKLAN HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEHHHH DIARRVNSDPSVGGLLKVVFVPNYNVSLAEKIIPAADLSEQISTAGMEASGTGNMKFALN HHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEE GALTIGTLDGANIEIKDRVGDANIEIFGLTAQEVEDKRANGYNPREVIESSRELQQAIAA CEEEEEECCCCCEEEEECCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IATGVFSPDDPQRYAGLMGGIYDHDWFMVAADFDAYHAAQRNIDRRWEQQPSWRASAIRN HHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHH IANVGWFSSDRTIGEYARDIWGVRDRA HHHCCCCCCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure SLDKNSRAAEIDAQIIDVLRHRVGKDERAAKPHDWYTATVLTLRDAIIDRWMESTRKTY CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AESGKRVYYLSLEFLIGRLLRDALSNMGLTRDMELALREHGFDLSALEDLEPDAALGNGG HHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCC LGRLAACFMESLASLDIPAYGYGIRYVNGMFRQRIDDGWQVELPETWLSHGNPWEFDRRE HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCCCCCC SAYIIGFGGEVVEKADGVEWRPAEKVEASAVDTPVVGWRGKRVNTLRLWTAHAFDPLRLD CEEEEECCHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEEE AFNAGDHFGALAEQVRADSLVRVLYPADSTPAGQELRLRQEYFFTSASIQDIVRRHVQYN EECCCCHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC GDIRTLPEKAAIQLNDTHPAVAVAELMRLMVDVHGLEFNEAWEVTKATVGYTNHTLLPEA CCEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEECCCCCCCCHHH LESWPLPLFERLLPRHMQIVYAINSRVLREARKAGLDDAAISAISLIDEGGERRVRMANL HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEHE AFSGAHSVNGVAALHTELMKTTVFSDLHKLYPARINNKTNGVTPRRWLQQCNPGLTSVLK EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHH DAIGDCFLDDAEKLSDLNALADDPALGERIAEVKRTNKIALAKHVKELMGIRLDPDALFD HHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHH VQIKRIHEYKRQLLNLIETVALYDQIRSHPERDWVPRVKIFGGKAASSYHNAKLIIKLAN HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEHHHH DIARRVNSDPSVGGLLKVVFVPNYNVSLAEKIIPAADLSEQISTAGMEASGTGNMKFALN HHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEE GALTIGTLDGANIEIKDRVGDANIEIFGLTAQEVEDKRANGYNPREVIESSRELQQAIAA CEEEEEECCCCCEEEEECCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IATGVFSPDDPQRYAGLMGGIYDHDWFMVAADFDAYHAAQRNIDRRWEQQPSWRASAIRN HHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHH IANVGWFSSDRTIGEYARDIWGVRDRA HHHCCCCCCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2645169; 3047129; 9278503; 2975249; 3097003 [H]