Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is yhiN [H]
Identifier: 87199651
GI number: 87199651
Start: 1709675
End: 1710853
Strand: Reverse
Name: yhiN [H]
Synonym: Saro_1634
Alternate gene names: 87199651
Gene position: 1710853-1709675 (Counterclockwise)
Preceding gene: 87199652
Following gene: 87199649
Centisome position: 48.04
GC content: 67.51
Gene sequence:
>1179_bases GTGAGCGCCGCCACCTTTGATGCAATAGTCCTCGGCGCGGGAGCGGCGGGCATGATGGCAGCCCTCACCGCCGGCCAGCG CGGTCGTCGTGTCCTTCTCGTGGACCACGCCCCCGAACCAGGCAAAAAGATCCTGATCTCGGGCGGAGGGCGCTGCAACT TCACCAATATCCACACTGCGCCAGACCGCTACCTCTCCGAAAACCCCCACTTCGCCCGTTCCGCCCTTGCCCGCTACACC CCGGCGGACTTCCTCGCCCTGGTGAACCGCCACGCCATTGCGTGGCACGAGAAGACGCTCGGCCAGCTTTTCTGCGACCA TTCCGCGCGCCAGATCGTCGACATGCTCGTGGCGGAATGCCGCGACGGAAGCGTTGCCTTCTCGTTCGGGGCGCCCGTCA CCGCCGTCGACCATGGCGACGGGCTCTTCCGCATCACGGTCGATGGACGCGAACGCACGGCGCCTTCGCTTGTCCTTGCA ACGGGCGGCCTTTCGATCCCGAAGATGGGCGCCACGGGCTTTTCGCTCGACCTTGCACGCCGCTTCGGCCTGCCAGTCGT GCAGACCCGCCCCGCTCTCGTGCCATTCACCCTGGGCGAGGACGAGGCGTTGTTCCGCTCGCTATCGGGCGTCTCGGCCG AAGTCGTGGCGCGCACAGGCAAGGTTTCCTTCCGCGAGGCCGCCCTCTTTACCCATCGCGGGCTGTCGGGTCCGGCAATG CTCCAGGTCTCGTCCTACTGGCAGCACCGCACGCCGATCGCCGTCGATTTCCTGCCCGATGCGCAGAGCGACTGGCTGCT CGAGGAAAAACGCGTCCGGCCCCGCGCAACCCTTCGCTCGACACTTGCCCGCCGCCTACCCGAACGGCTCGCCGAAGCGC TGGCCGACCGGCTTTCCATCGAAAGCGAACTCGGCAACTGCCGTGACGCCGGCCTGCGCGCCGCGCAAGAGCGCCTTGCC CGCTGGCCGTTCCAGCCCACGGGAACTGAAGGCTATGCCAAGGCCGAGGTCATGGCCGGCGGCATTTCCACACGCGCCCT GTCGCAAAAGACGATGGAGGCAACGAAGGTTTCCGGGCTTTTTGCCGTGGGCGAGGCAGTCGACGTCACCGGGTGGCTTG GCGGCTACAACTTCCAGTGGGCCTGGGCCAGCGGCCGCGCGGCGGGCGAAGCGCTCTAG
Upstream 100 bases:
>100_bases TCTACCCGGCCGGCGAAGGCGCGGGCTATGCCGGCGGCATTCTCTCGGCGGCAGTAGATGGCATCAAGGTGGCCGAGGCC CTCGCCGCGCAGCTCGTAAA
Downstream 100 bases:
>100_bases GCCTAACCACCGATCAGGTCGAGGTAGGCGACTACATCATTGTCGGTCGCGATATAGAGCCCGGCCTGGATCGCCTCGGG CTGGGCTGCCGCCATTTCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MSAATFDAIVLGAGAAGMMAALTAGQRGRRVLLVDHAPEPGKKILISGGGRCNFTNIHTAPDRYLSENPHFARSALARYT PADFLALVNRHAIAWHEKTLGQLFCDHSARQIVDMLVAECRDGSVAFSFGAPVTAVDHGDGLFRITVDGRERTAPSLVLA TGGLSIPKMGATGFSLDLARRFGLPVVQTRPALVPFTLGEDEALFRSLSGVSAEVVARTGKVSFREAALFTHRGLSGPAM LQVSSYWQHRTPIAVDFLPDAQSDWLLEEKRVRPRATLRSTLARRLPERLAEALADRLSIESELGNCRDAGLRAAQERLA RWPFQPTGTEGYAKAEVMAGGISTRALSQKTMEATKVSGLFAVGEAVDVTGWLGGYNFQWAWASGRAAGEAL
Sequences:
>Translated_392_residues MSAATFDAIVLGAGAAGMMAALTAGQRGRRVLLVDHAPEPGKKILISGGGRCNFTNIHTAPDRYLSENPHFARSALARYT PADFLALVNRHAIAWHEKTLGQLFCDHSARQIVDMLVAECRDGSVAFSFGAPVTAVDHGDGLFRITVDGRERTAPSLVLA TGGLSIPKMGATGFSLDLARRFGLPVVQTRPALVPFTLGEDEALFRSLSGVSAEVVARTGKVSFREAALFTHRGLSGPAM LQVSSYWQHRTPIAVDFLPDAQSDWLLEEKRVRPRATLRSTLARRLPERLAEALADRLSIESELGNCRDAGLRAAQERLA RWPFQPTGTEGYAKAEVMAGGISTRALSQKTMEATKVSGLFAVGEAVDVTGWLGGYNFQWAWASGRAAGEAL >Mature_391_residues SAATFDAIVLGAGAAGMMAALTAGQRGRRVLLVDHAPEPGKKILISGGGRCNFTNIHTAPDRYLSENPHFARSALARYTP ADFLALVNRHAIAWHEKTLGQLFCDHSARQIVDMLVAECRDGSVAFSFGAPVTAVDHGDGLFRITVDGRERTAPSLVLAT GGLSIPKMGATGFSLDLARRFGLPVVQTRPALVPFTLGEDEALFRSLSGVSAEVVARTGKVSFREAALFTHRGLSGPAML QVSSYWQHRTPIAVDFLPDAQSDWLLEEKRVRPRATLRSTLARRLPERLAEALADRLSIESELGNCRDAGLRAAQERLAR WPFQPTGTEGYAKAEVMAGGISTRALSQKTMEATKVSGLFAVGEAVDVTGWLGGYNFQWAWASGRAAGEAL
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0933 [H]
Homologues:
Organism=Escherichia coli, GI2367234, Length=399, Percent_Identity=51.6290726817043, Blast_Score=380, Evalue=1e-107,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 - InterPro: IPR023166 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 42127; Mature: 41995
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAATFDAIVLGAGAAGMMAALTAGQRGRRVLLVDHAPEPGKKILISGGGRCNFTNIHTA CCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCEEECCCCCCC PDRYLSENPHFARSALARYTPADFLALVNRHAIAWHEKTLGQLFCDHSARQIVDMLVAEC CHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHEEHHHHHHHHHHCCHHHHHHHHHHHHC RDGSVAFSFGAPVTAVDHGDGLFRITVDGRERTAPSLVLATGGLSIPKMGATGFSLDLAR CCCCEEEECCCCEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH RFGLPVVQTRPALVPFTLGEDEALFRSLSGVSAEVVARTGKVSFREAALFTHRGLSGPAM HHCCCEEECCCCEEEEECCCHHHHHHHHCCCCCEEHHCCCCCCHHHHHHHHHCCCCCCEE LQVSSYWQHRTPIAVDFLPDAQSDWLLEEKRVRPRATLRSTLARRLPERLAEALADRLSI EEEHHHHCCCCCEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ESELGNCRDAGLRAAQERLARWPFQPTGTEGYAKAEVMAGGISTRALSQKTMEATKVSGL HHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEHEEEECCCHHHHHHHHHHHHHHHCCC FAVGEAVDVTGWLGGYNFQWAWASGRAAGEAL EEECCCEEEEEECCCCCEEEEECCCCCCCCCC >Mature Secondary Structure SAATFDAIVLGAGAAGMMAALTAGQRGRRVLLVDHAPEPGKKILISGGGRCNFTNIHTA CCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCEEECCCCCCC PDRYLSENPHFARSALARYTPADFLALVNRHAIAWHEKTLGQLFCDHSARQIVDMLVAEC CHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHEEHHHHHHHHHHCCHHHHHHHHHHHHC RDGSVAFSFGAPVTAVDHGDGLFRITVDGRERTAPSLVLATGGLSIPKMGATGFSLDLAR CCCCEEEECCCCEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH RFGLPVVQTRPALVPFTLGEDEALFRSLSGVSAEVVARTGKVSFREAALFTHRGLSGPAM HHCCCEEECCCCEEEEECCCHHHHHHHHCCCCCEEHHCCCCCCHHHHHHHHHCCCCCCEE LQVSSYWQHRTPIAVDFLPDAQSDWLLEEKRVRPRATLRSTLARRLPERLAEALADRLSI EEEHHHHCCCCCEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ESELGNCRDAGLRAAQERLARWPFQPTGTEGYAKAEVMAGGISTRALSQKTMEATKVSGL HHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEHEEEECCCHHHHHHHHHHHHHHHCCC FAVGEAVDVTGWLGGYNFQWAWASGRAAGEAL EEECCCEEEEEECCCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]