| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is fpvA [H]
Identifier: 87199075
GI number: 87199075
Start: 1093126
End: 1095501
Strand: Direct
Name: fpvA [H]
Synonym: Saro_1053
Alternate gene names: 87199075
Gene position: 1093126-1095501 (Clockwise)
Preceding gene: 87199069
Following gene: 87199076
Centisome position: 30.69
GC content: 63.05
Gene sequence:
>2376_bases ATGAACAAGCAAAGCAATCTGCAGTCGGCCAATGCGCGCAAGATCAACTCGTACAAGGCGCTGCTTGCCGGAACGGCCGT TCTGGCCGTGGTGTCTCCTGCTGCCGCGCAGGAAGCGGCCAGCGAGGATCCGGGCGAAATCGTCGTGACCGCAACCCGGC AGTCCGAAACGATTTCGAAGGTGCCGCTCAGCATCGCCGCCTACAGCCAGGAAAAGCTCGATCAGCAGGGCGTACGGCGG GTTGACGACGTCGCTCGCCTGACTCCGGGCGTCACCTTCTCGCGAGGGGACCAGCGCAATGCAGGCGCGGCGAACATTTC CATCCGCGGCATTTCGTCGGCGGCAGGGTCTTCCACCACCGGCATCTATATCGACGATACGCCCATCCAGATCCGCAACG TCGGCTTCAGCGCCTTCACGCCGTTTCCCGCAGTCTTTGACCTGCAGCGGGTCGAGGTGCTGCGCGGACCGCAGGGCACG CTGTTCGGCGCAGGGTCCGAAGGCGGCACCGTCCGTTTCATTACGCCCAGCCCGGATTTCGATGAAATGAAGTTCTATGC GCGAAGCGAACTGGCCACGACCAAGAGCGGCGAGGCAAGCTTCGAGGCGGGCGCTGCGATCAGCGTGCCGCTCGTCAAGG ACAAGCTCGCCGCGCGGGTCAGCGGCTACTACCGGCGCGACGGTGGCTATATCGACCGCGTCGACTACACCAGCGGCAAC GTGCTGGACAAGAATTCGAACTGGCAGGACACCAAGGTGGCCAGCGCATCGCTCGCATGGAAAGCCACCGACGCGGTCAC AGTTACCCCTTCGGTCTATTTCCAGGAAACCTGGAACAACGACGCGGGCACCTATTGGGAAGTGCTGTCCGACGCCGGGA AGGGCCAGTTCAACAACGGCAATGCGGTTGCCAACTGGAATCGCGACCGTTTCGTGCTGCCCGCGCTGAAGATCGAGGCG GAGCTGGGCGACGTGTCACTGATCTCCAACACGTCCTACTTCTACCGCGACCAGAAGGCCCAGAACGATTACACCGTGTT CGAGGCCGCGCTCTGGACCGGCAACCCGTTCTATCCCGCAGGAATGTATGCGCCGGCGTTCCAGTACAACAGGCAATCCA ACTTCACCCAGGAACTTCGCCTGCAGTCCAACAATCCGGACAGCCCCTTGCGCTGGGTGATCGGCGGCTTCTATGCGCAC AATCGCCAGACTGCCCGCCAATTCGTCCAGGACACATTCCTGCCGGACCTGTTTGAATCGGTGACGGGCGTGCCGTTCGT GGCCGTGTTCGGCCAGGGGCTGGTGGACGACAAGTACACGTTCGTGCTCGACAAGGCGGCATCGACCGACGAACAGATCG CCGGCTTCGGGCAGGTCGACTACAACCTGACCGAACAGTTCAAGCTCACAGCCGGCCTGCGCGTGGCGCATACCAAATTC AGCACCAGCGCGCAGTTCGTCGGGCCGGTGGTCGGCCCGGATGTCGATGACACCGGCAAGCAGAGCGAAACCCCGGTGAC GCCGAAGTTCGGCTTGTCCTGGCAAGCCAACGAGGACAACCTCGTCTACGCCACGGCATCGAAGGGCTTCCGCATCGGTG GCTACAATCCGGCCGTGGGCCTGCCTTGCGGTGTCTCCAGCTCTCCGGTCGCCGGAACTGCCTTGGGCAACCTCGGTCTT TCCGATCGCCCGCAGCAGTTCGGATCGGATTCGGTCTGGAGCTACGAGATCGGATCGAAGAACAAGCTGTTCGGCCGCGC GCTGACCCTGGAAAGCAGCGCGTTCCTGATCGACTGGAGCAATATCCAGCAGCAGGTCCAGCTCAACGCCTGCGGCTTCA ATTTCACCCAGAATCTCGGCAAGGCGCGCAGCAAGGGCTTCGACGTGCAGTTCCAGCTCAAGGCAGCGGCCGGCCTGACC CTTGGCGGGTCGATCGGCTACACCAAGGCCGAGTTCACCCAGACGGTGAAGGGCGGTCCCGCCGCCACGCTCAACCTTGT CACCAAGGGCGACGACATTCCGCTGAACCCCTGGCAGATCGTGCTCAATGCCCAGTACGATTTCGCCGTGGGTGGCAAGG ATGCCTATGTCCGGGCGGACTTCCAGCATCTGTCCCGCCAGAATGCGGACACGCCAGCCCGCAATCCCGCCAACGGCGTT GCCGACCTGACCATTCCGGGCGTGGCCGAGGTCAACAACCTCAATCTCCGGGCAGGCGTGCGCTTCGATCTGGTGGAACT GGCGGTGTTCGCCAACAACGTCACCGACGCGACGCCGCTGCTGCTGCGCCAGCATGATGTCGGCTTCTCGACGCTTTACC GCAACGCCACGTTGCGCCCGCGCACCATCGGCCTGACCGCCACTGTACGTTACTGA
Upstream 100 bases:
>100_bases ATGATGCGGCAGCGTGCGCGCCCGACCTAGCCTCCCTCCTGAAGTCGCCAGATGACCGTCATGCGACGGCAATGGCAGCC ATCTGTTCATGGGGGGAATG
Downstream 100 bases:
>100_bases AGAAGGATGAGGACATGAAGGCGATGCTAAAGGCAGCTTCCGCGCTTGCCGGTCTTGGCTTGACGCTTGGTGCAGCGGTG CAGGGACACGCTGCGGAAAG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 791; Mature: 791
Protein sequence:
>791_residues MNKQSNLQSANARKINSYKALLAGTAVLAVVSPAAAQEAASEDPGEIVVTATRQSETISKVPLSIAAYSQEKLDQQGVRR VDDVARLTPGVTFSRGDQRNAGAANISIRGISSAAGSSTTGIYIDDTPIQIRNVGFSAFTPFPAVFDLQRVEVLRGPQGT LFGAGSEGGTVRFITPSPDFDEMKFYARSELATTKSGEASFEAGAAISVPLVKDKLAARVSGYYRRDGGYIDRVDYTSGN VLDKNSNWQDTKVASASLAWKATDAVTVTPSVYFQETWNNDAGTYWEVLSDAGKGQFNNGNAVANWNRDRFVLPALKIEA ELGDVSLISNTSYFYRDQKAQNDYTVFEAALWTGNPFYPAGMYAPAFQYNRQSNFTQELRLQSNNPDSPLRWVIGGFYAH NRQTARQFVQDTFLPDLFESVTGVPFVAVFGQGLVDDKYTFVLDKAASTDEQIAGFGQVDYNLTEQFKLTAGLRVAHTKF STSAQFVGPVVGPDVDDTGKQSETPVTPKFGLSWQANEDNLVYATASKGFRIGGYNPAVGLPCGVSSSPVAGTALGNLGL SDRPQQFGSDSVWSYEIGSKNKLFGRALTLESSAFLIDWSNIQQQVQLNACGFNFTQNLGKARSKGFDVQFQLKAAAGLT LGGSIGYTKAEFTQTVKGGPAATLNLVTKGDDIPLNPWQIVLNAQYDFAVGGKDAYVRADFQHLSRQNADTPARNPANGV ADLTIPGVAEVNNLNLRAGVRFDLVELAVFANNVTDATPLLLRQHDVGFSTLYRNATLRPRTIGLTATVRY
Sequences:
>Translated_791_residues MNKQSNLQSANARKINSYKALLAGTAVLAVVSPAAAQEAASEDPGEIVVTATRQSETISKVPLSIAAYSQEKLDQQGVRR VDDVARLTPGVTFSRGDQRNAGAANISIRGISSAAGSSTTGIYIDDTPIQIRNVGFSAFTPFPAVFDLQRVEVLRGPQGT LFGAGSEGGTVRFITPSPDFDEMKFYARSELATTKSGEASFEAGAAISVPLVKDKLAARVSGYYRRDGGYIDRVDYTSGN VLDKNSNWQDTKVASASLAWKATDAVTVTPSVYFQETWNNDAGTYWEVLSDAGKGQFNNGNAVANWNRDRFVLPALKIEA ELGDVSLISNTSYFYRDQKAQNDYTVFEAALWTGNPFYPAGMYAPAFQYNRQSNFTQELRLQSNNPDSPLRWVIGGFYAH NRQTARQFVQDTFLPDLFESVTGVPFVAVFGQGLVDDKYTFVLDKAASTDEQIAGFGQVDYNLTEQFKLTAGLRVAHTKF STSAQFVGPVVGPDVDDTGKQSETPVTPKFGLSWQANEDNLVYATASKGFRIGGYNPAVGLPCGVSSSPVAGTALGNLGL SDRPQQFGSDSVWSYEIGSKNKLFGRALTLESSAFLIDWSNIQQQVQLNACGFNFTQNLGKARSKGFDVQFQLKAAAGLT LGGSIGYTKAEFTQTVKGGPAATLNLVTKGDDIPLNPWQIVLNAQYDFAVGGKDAYVRADFQHLSRQNADTPARNPANGV ADLTIPGVAEVNNLNLRAGVRFDLVELAVFANNVTDATPLLLRQHDVGFSTLYRNATLRPRTIGLTATVRY >Mature_791_residues MNKQSNLQSANARKINSYKALLAGTAVLAVVSPAAAQEAASEDPGEIVVTATRQSETISKVPLSIAAYSQEKLDQQGVRR VDDVARLTPGVTFSRGDQRNAGAANISIRGISSAAGSSTTGIYIDDTPIQIRNVGFSAFTPFPAVFDLQRVEVLRGPQGT LFGAGSEGGTVRFITPSPDFDEMKFYARSELATTKSGEASFEAGAAISVPLVKDKLAARVSGYYRRDGGYIDRVDYTSGN VLDKNSNWQDTKVASASLAWKATDAVTVTPSVYFQETWNNDAGTYWEVLSDAGKGQFNNGNAVANWNRDRFVLPALKIEA ELGDVSLISNTSYFYRDQKAQNDYTVFEAALWTGNPFYPAGMYAPAFQYNRQSNFTQELRLQSNNPDSPLRWVIGGFYAH NRQTARQFVQDTFLPDLFESVTGVPFVAVFGQGLVDDKYTFVLDKAASTDEQIAGFGQVDYNLTEQFKLTAGLRVAHTKF STSAQFVGPVVGPDVDDTGKQSETPVTPKFGLSWQANEDNLVYATASKGFRIGGYNPAVGLPCGVSSSPVAGTALGNLGL SDRPQQFGSDSVWSYEIGSKNKLFGRALTLESSAFLIDWSNIQQQVQLNACGFNFTQNLGKARSKGFDVQFQLKAAAGLT LGGSIGYTKAEFTQTVKGGPAATLNLVTKGDDIPLNPWQIVLNAQYDFAVGGKDAYVRADFQHLSRQNADTPARNPANGV ADLTIPGVAEVNNLNLRAGVRFDLVELAVFANNVTDATPLLLRQHDVGFSTLYRNATLRPRTIGLTATVRY
Specific function: Receptor for the siderophore ferripyoverdine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=154, Percent_Identity=33.1168831168831, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 85501; Mature: 85501
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKQSNLQSANARKINSYKALLAGTAVLAVVSPAAAQEAASEDPGEIVVTATRQSETISK CCCCCCCCCCCCHHHHHHHHHHHHHEEEEHCCCHHHHHHCCCCCCCEEEEEECCCCCHHH VPLSIAAYSQEKLDQQGVRRVDDVARLTPGVTFSRGDQRNAGAANISIRGISSAAGSSTT CCEEEEHHCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCC GIYIDDTPIQIRNVGFSAFTPFPAVFDLQRVEVLRGPQGTLFGAGSEGGTVRFITPSPDF EEEEECCCEEEEECCCHHCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCH DEMKFYARSELATTKSGEASFEAGAAISVPLVKDKLAARVSGYYRRDGGYIDRVDYTSGN HHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCEEECCCCEEEEEECCCCC VLDKNSNWQDTKVASASLAWKATDAVTVTPSVYFQETWNNDAGTYWEVLSDAGKGQFNNG EEECCCCCCCCEEEEEEEEEECCCEEEECCCEEEEECCCCCCCHHHHHHHCCCCCCCCCC NAVANWNRDRFVLPALKIEAELGDVSLISNTSYFYRDQKAQNDYTVFEAALWTGNPFYPA CEEEECCCCEEEEEEEEEEECCCCEEEEECCCEEEECCCCCCCCEEEEEEEECCCCCCCC GMYAPAFQYNRQSNFTQELRLQSNNPDSPLRWVIGGFYAHNRQTARQFVQDTFLPDLFES CCCCCCHHCCCCCCCCEEEEECCCCCCCCHHHEEEHHHHCCHHHHHHHHHHHCCHHHHHH VTGVPFVAVFGQGLVDDKYTFVLDKAASTDEQIAGFGQVDYNLTEQFKLTAGLRVAHTKF HCCCEEEEHHCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCEEEEECCEEEEEEEC STSAQFVGPVVGPDVDDTGKQSETPVTPKFGLSWQANEDNLVYATASKGFRIGGYNPAVG CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEECCCCCCCC LPCGVSSSPVAGTALGNLGLSDRPQQFGSDSVWSYEIGSKNKLFGRALTLESSAFLIDWS CCCCCCCCCCCCEEECCCCCCCCCHHHCCCCEEEEECCCCCCEEEEEEEECCCEEEEEHH NIQQQVQLNACGFNFTQNLGKARSKGFDVQFQLKAAAGLTLGGSIGYTKAEFTQTVKGGP CCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCEEECCCCCCCHHHHHHHCCCCC AATLNLVTKGDDIPLNPWQIVLNAQYDFAVGGKDAYVRADFQHLSRQNADTPARNPANGV CEEEEEEECCCCCCCCCEEEEEECCEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCCCCE ADLTIPGVAEVNNLNLRAGVRFDLVELAVFANNVTDATPLLLRQHDVGFSTLYRNATLRP EEEECCCCEEECCEEEECCCEEHHEEEEHHHCCCCCCCCEEEEECCCCHHHHHCCCCCCC RTIGLTATVRY EEEEEEEEEEC >Mature Secondary Structure MNKQSNLQSANARKINSYKALLAGTAVLAVVSPAAAQEAASEDPGEIVVTATRQSETISK CCCCCCCCCCCCHHHHHHHHHHHHHEEEEHCCCHHHHHHCCCCCCCEEEEEECCCCCHHH VPLSIAAYSQEKLDQQGVRRVDDVARLTPGVTFSRGDQRNAGAANISIRGISSAAGSSTT CCEEEEHHCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCC GIYIDDTPIQIRNVGFSAFTPFPAVFDLQRVEVLRGPQGTLFGAGSEGGTVRFITPSPDF EEEEECCCEEEEECCCHHCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCH DEMKFYARSELATTKSGEASFEAGAAISVPLVKDKLAARVSGYYRRDGGYIDRVDYTSGN HHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCEEECCCCEEEEEECCCCC VLDKNSNWQDTKVASASLAWKATDAVTVTPSVYFQETWNNDAGTYWEVLSDAGKGQFNNG EEECCCCCCCCEEEEEEEEEECCCEEEECCCEEEEECCCCCCCHHHHHHHCCCCCCCCCC NAVANWNRDRFVLPALKIEAELGDVSLISNTSYFYRDQKAQNDYTVFEAALWTGNPFYPA CEEEECCCCEEEEEEEEEEECCCCEEEEECCCEEEECCCCCCCCEEEEEEEECCCCCCCC GMYAPAFQYNRQSNFTQELRLQSNNPDSPLRWVIGGFYAHNRQTARQFVQDTFLPDLFES CCCCCCHHCCCCCCCCEEEEECCCCCCCCHHHEEEHHHHCCHHHHHHHHHHHCCHHHHHH VTGVPFVAVFGQGLVDDKYTFVLDKAASTDEQIAGFGQVDYNLTEQFKLTAGLRVAHTKF HCCCEEEEHHCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCEEEEECCEEEEEEEC STSAQFVGPVVGPDVDDTGKQSETPVTPKFGLSWQANEDNLVYATASKGFRIGGYNPAVG CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEECCCCCCCC LPCGVSSSPVAGTALGNLGLSDRPQQFGSDSVWSYEIGSKNKLFGRALTLESSAFLIDWS CCCCCCCCCCCCEEECCCCCCCCCHHHCCCCEEEEECCCCCCEEEEEEEECCCEEEEEHH NIQQQVQLNACGFNFTQNLGKARSKGFDVQFQLKAAAGLTLGGSIGYTKAEFTQTVKGGP CCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCEEECCCCCCCHHHHHHHCCCCC AATLNLVTKGDDIPLNPWQIVLNAQYDFAVGGKDAYVRADFQHLSRQNADTPARNPANGV CEEEEEEECCCCCCCCCEEEEEECCEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCCCCE ADLTIPGVAEVNNLNLRAGVRFDLVELAVFANNVTDATPLLLRQHDVGFSTLYRNATLRP EEEECCCCEEECCEEEECCCEEHHEEEEHHHCCCCCCCCEEEEECCCCHHHHHCCCCCCC RTIGLTATVRY EEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8335619; 8918232; 10984043 [H]