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The map label for this gene is exbD [H]

Identifier: 87199037

GI number: 87199037

Start: 1055129

End: 1055581

Strand: Direct

Name: exbD [H]

Synonym: Saro_1015

Alternate gene names: 87199037

Gene position: 1055129-1055581 (Clockwise)

Preceding gene: 87199036

Following gene: 87199038

Centisome position: 29.63

GC content: 68.43

Gene sequence:

>453_bases
ATGGCGATGTCCGTCGGAGGCGGTGGAGGTGGCGGCCGTGGCAGGCGCGGCCGTGGTGGCCGTGCCGCGATGAGCGAGAT
CAACGTCACGCCGCTGGTCGACGTCATGCTGGTGCTGCTGATCATCTTCATGGTCACCGCGCCGATGCTGGCGGCTGGCG
TGCCGGTCGACCTGCCCGACAGCAAGGCCGATCCGCTCGACCAGCAGCAGGACCAGATCACCGTCAGCATCGATGCGCAG
GGCAACGTCTTCCTCGACGACCAGCAGCTTGCGCCGGGCGAACTGACCGATCGCCTCGCCGGGCTCCAGCGCGGGCCCAA
GCCGCCTCTTGTCACCCTGCGCGCGGATCGTGTGCTCGACTGGGGCCGCGTCGCCGCCGTGATGGGCGAACTGAACGCGG
CGGGGTTCAAGTCGATCTCGCTGGTCACCAACAGTTCATCCGCGCCGCAATAG

Upstream 100 bases:

>100_bases
CAATCGCTTCTCGCACCGCGTGAACCGCTTCGAGACGCGCCTCTACCGCTTCGCCGACCGGTTCCACGCCTCGCTCAGCC
GCGAACTGGAGGTCTGAGCC

Downstream 100 bases:

>100_bases
GCCTGTTGTGATGCGCGACCCCGTGTCAGAAGGACTGTCGAGGCAGGAAGGTGCCGGGCTGGCGATTGCCGCCGCCGCGC
ACGTCGCGCTGCTCGTCGTC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MAMSVGGGGGGGRGRRGRGGRAAMSEINVTPLVDVMLVLLIIFMVTAPMLAAGVPVDLPDSKADPLDQQQDQITVSIDAQ
GNVFLDDQQLAPGELTDRLAGLQRGPKPPLVTLRADRVLDWGRVAAVMGELNAAGFKSISLVTNSSSAPQ

Sequences:

>Translated_150_residues
MAMSVGGGGGGGRGRRGRGGRAAMSEINVTPLVDVMLVLLIIFMVTAPMLAAGVPVDLPDSKADPLDQQQDQITVSIDAQ
GNVFLDDQQLAPGELTDRLAGLQRGPKPPLVTLRADRVLDWGRVAAVMGELNAAGFKSISLVTNSSSAPQ
>Mature_149_residues
AMSVGGGGGGGRGRRGRGGRAAMSEINVTPLVDVMLVLLIIFMVTAPMLAAGVPVDLPDSKADPLDQQQDQITVSIDAQG
NVFLDDQQLAPGELTDRLAGLQRGPKPPLVTLRADRVLDWGRVAAVMGELNAAGFKSISLVTNSSSAPQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=119, Percent_Identity=37.8151260504202, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15561; Mature: 15430

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMSVGGGGGGGRGRRGRGGRAAMSEINVTPLVDVMLVLLIIFMVTAPMLAAGVPVDLPD
CEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SKADPLDQQQDQITVSIDAQGNVFLDDQQLAPGELTDRLAGLQRGPKPPLVTLRADRVLD
CCCCCCCCCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
WGRVAAVMGELNAAGFKSISLVTNSSSAPQ
HHHHHHHHHHCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure 
AMSVGGGGGGGRGRRGRGGRAAMSEINVTPLVDVMLVLLIIFMVTAPMLAAGVPVDLPD
EEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SKADPLDQQQDQITVSIDAQGNVFLDDQQLAPGELTDRLAGLQRGPKPPLVTLRADRVLD
CCCCCCCCCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
WGRVAAVMGELNAAGFKSISLVTNSSSAPQ
HHHHHHHHHHCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]