Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is yfeW [C]
Identifier: 87198983
GI number: 87198983
Start: 1007956
End: 1009251
Strand: Direct
Name: yfeW [C]
Synonym: Saro_0961
Alternate gene names: 87198983
Gene position: 1007956-1009251 (Clockwise)
Preceding gene: 87198982
Following gene: 87198984
Centisome position: 28.3
GC content: 69.14
Gene sequence:
>1296_bases ATGCGGCAGATGGCGGTTTCAAGGCGCGGGCTGATCGGATCGCTGGGGGCGCTGGCCGGCTGTGCGCTGATGCCGCGACT GGCGTGGGCGAGCGCGGCGGCCGAGGCCCGCTTTCCGGCGGTGGCGCGGATGGTCGACGGCTATGTCTCGTCCGGCAAGC TGCCGGGCATGATCGCGGCGCTCGGCTGGGGCTCGAGCGAGGCGGCGATGGACATATCGCGCGGCGCGCTGGCCAAGGGC GGCGCGGCGGCCGTGGACATGGACAGCCTGTTCCGCATCTATTCGATGACCAAGCCGATAACCGGCATGGCCGCGATGAT GCTGGTGGACGAAGGGCGGTTGAGGCTCGACCAGCCGATAGCGGACCTGCTTCCCGCCTTCGCGAAGATGCAAGTGCAGG CGGTGCCCGACGGTTCGATCTCCGACCTGAGGCCGGCGAAGACGCAGATCACCGTGCGGCACCTGCTGACGCACACGGCA GGGCTGGGCTATTCGATCATCCAGAAGGGGCCGATCCGCGATGCCTACGTGAAAGCGGGGCTGGTGCCGGGACAGGCGAG CCGGATGCCGCTTCCGGGGATGGACGCGCCGAAGCCGCTGGCCAGCCTTGCCGAGTTCGCGGACGTGCTGGCGACGATGC CGCTGGTGTACGAGCCGGGGACGGTGTGGAGCTATTCGGTGGGGCTCGACCTGCTGGGGCGGGTGATCGAGGTGGCATCG GGCAAGCCGTTCGATGCGTTCCTGGCGGAGCGGCTGTTCGAGCCTTGCGGCATGACTTCGACCTGGTTCCGTGTGCCCGC GGCAGAGGCGGGGCGGCTGACGACCAATTATGGCGTCCTTGGCGGGCTGCTGCTGCCGATCGATCCGGGCCGGTCGTCGA CCTATCTCGATGCTCCGCCCTATCCGTTCGGCGGAGCAGGGCTGGTGTCCTCTCCGCGCGACTACGACCGTTTCCTGGCG ATGCTGCTGGGCTTCGGCCGGATAGACGGGCGCGAGGTGATGAGCGAGGCGGCTGTGCGGCTGGGGACGAGCAATCTCCT GCCCGCAGGCACCGACCTCTCGCGCTCGTTCATCAAGGGCAACGGTTTCGGCGCGGGCGGCTCGGTCGGGCTGGGCGAGG ATGCCGGGACGTTCGGCTGGGCCGGGGCGGCGGGGACCGTCGGCTTCGTAAGCTACCGGGCGGCGGTGCGGGCTGGCGTC TATACCCAGTACATGCCGTCGGACGCCTATCCGGTGCACCAGGAATTCGCAAAGGCCGTGCTGGCCGATGTAACGGGAAG GAAGGCCGCGGCCTGA
Upstream 100 bases:
>100_bases GGAGAATGGTGGCCAGTCGACGAGATCGAGGCCGCCGGATTGCCGACCGTTTTCGCCAAGGCGGCGCGGCTGGCGATTGC CGAAAGGATTGGCTGACAAG
Downstream 100 bases:
>100_bases TGGAAACGACGATTGCATTCGCAGGCGCAGGGCTCGACCGCGCCGACCACGTCCGCGCCGATGCCGGGAAGCTCGGCGAG CTGATGAACTGGCGCGCCCG
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 431; Mature: 431
Protein sequence:
>431_residues MRQMAVSRRGLIGSLGALAGCALMPRLAWASAAAEARFPAVARMVDGYVSSGKLPGMIAALGWGSSEAAMDISRGALAKG GAAAVDMDSLFRIYSMTKPITGMAAMMLVDEGRLRLDQPIADLLPAFAKMQVQAVPDGSISDLRPAKTQITVRHLLTHTA GLGYSIIQKGPIRDAYVKAGLVPGQASRMPLPGMDAPKPLASLAEFADVLATMPLVYEPGTVWSYSVGLDLLGRVIEVAS GKPFDAFLAERLFEPCGMTSTWFRVPAAEAGRLTTNYGVLGGLLLPIDPGRSSTYLDAPPYPFGGAGLVSSPRDYDRFLA MLLGFGRIDGREVMSEAAVRLGTSNLLPAGTDLSRSFIKGNGFGAGGSVGLGEDAGTFGWAGAAGTVGFVSYRAAVRAGV YTQYMPSDAYPVHQEFAKAVLADVTGRKAAA
Sequences:
>Translated_431_residues MRQMAVSRRGLIGSLGALAGCALMPRLAWASAAAEARFPAVARMVDGYVSSGKLPGMIAALGWGSSEAAMDISRGALAKG GAAAVDMDSLFRIYSMTKPITGMAAMMLVDEGRLRLDQPIADLLPAFAKMQVQAVPDGSISDLRPAKTQITVRHLLTHTA GLGYSIIQKGPIRDAYVKAGLVPGQASRMPLPGMDAPKPLASLAEFADVLATMPLVYEPGTVWSYSVGLDLLGRVIEVAS GKPFDAFLAERLFEPCGMTSTWFRVPAAEAGRLTTNYGVLGGLLLPIDPGRSSTYLDAPPYPFGGAGLVSSPRDYDRFLA MLLGFGRIDGREVMSEAAVRLGTSNLLPAGTDLSRSFIKGNGFGAGGSVGLGEDAGTFGWAGAAGTVGFVSYRAAVRAGV YTQYMPSDAYPVHQEFAKAVLADVTGRKAAA >Mature_431_residues MRQMAVSRRGLIGSLGALAGCALMPRLAWASAAAEARFPAVARMVDGYVSSGKLPGMIAALGWGSSEAAMDISRGALAKG GAAAVDMDSLFRIYSMTKPITGMAAMMLVDEGRLRLDQPIADLLPAFAKMQVQAVPDGSISDLRPAKTQITVRHLLTHTA GLGYSIIQKGPIRDAYVKAGLVPGQASRMPLPGMDAPKPLASLAEFADVLATMPLVYEPGTVWSYSVGLDLLGRVIEVAS GKPFDAFLAERLFEPCGMTSTWFRVPAAEAGRLTTNYGVLGGLLLPIDPGRSSTYLDAPPYPFGGAGLVSSPRDYDRFLA MLLGFGRIDGREVMSEAAVRLGTSNLLPAGTDLSRSFIKGNGFGAGGSVGLGEDAGTFGWAGAAGTVGFVSYRAAVRAGV YTQYMPSDAYPVHQEFAKAVLADVTGRKAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI17550934, Length=274, Percent_Identity=30.6569343065693, Blast_Score=85, Evalue=9e-17, Organism=Caenorhabditis elegans, GI115533026, Length=240, Percent_Identity=28.3333333333333, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 45021; Mature: 45021
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQMAVSRRGLIGSLGALAGCALMPRLAWASAAAEARFPAVARMVDGYVSSGKLPGMIAA CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE LGWGSSEAAMDISRGALAKGGAAAVDMDSLFRIYSMTKPITGMAAMMLVDEGRLRLDQPI ECCCCCHHHHHHHCCCCCCCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCH ADLLPAFAKMQVQAVPDGSISDLRPAKTQITVRHLLTHTAGLGYSIIQKGPIRDAYVKAG HHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHC LVPGQASRMPLPGMDAPKPLASLAEFADVLATMPLVYEPGTVWSYSVGLDLLGRVIEVAS CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCEEEHHHHHHHHHHHHHHC GKPFDAFLAERLFEPCGMTSTWFRVPAAEAGRLTTNYGVLGGLLLPIDPGRSSTYLDAPP CCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEECCHHHCCEEEEECCCCCCCCCCCCC YPFGGAGLVSSPRDYDRFLAMLLGFGRIDGREVMSEAAVRLGTSNLLPAGTDLSRSFIKG CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCC NGFGAGGSVGLGEDAGTFGWAGAAGTVGFVSYRAAVRAGVYTQYMPSDAYPVHQEFAKAV CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH LADVTGRKAAA HHHHCCCCCCC >Mature Secondary Structure MRQMAVSRRGLIGSLGALAGCALMPRLAWASAAAEARFPAVARMVDGYVSSGKLPGMIAA CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE LGWGSSEAAMDISRGALAKGGAAAVDMDSLFRIYSMTKPITGMAAMMLVDEGRLRLDQPI ECCCCCHHHHHHHCCCCCCCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCH ADLLPAFAKMQVQAVPDGSISDLRPAKTQITVRHLLTHTAGLGYSIIQKGPIRDAYVKAG HHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHC LVPGQASRMPLPGMDAPKPLASLAEFADVLATMPLVYEPGTVWSYSVGLDLLGRVIEVAS CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCEEEHHHHHHHHHHHHHHC GKPFDAFLAERLFEPCGMTSTWFRVPAAEAGRLTTNYGVLGGLLLPIDPGRSSTYLDAPP CCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEECCHHHCCEEEEECCCCCCCCCCCCC YPFGGAGLVSSPRDYDRFLAMLLGFGRIDGREVMSEAAVRLGTSNLLPAGTDLSRSFIKG CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCC NGFGAGGSVGLGEDAGTFGWAGAAGTVGFVSYRAAVRAGVYTQYMPSDAYPVHQEFAKAV CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH LADVTGRKAAA HHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]