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The map label for this gene is nudC [H]

Identifier: 87198984

GI number: 87198984

Start: 1009251

End: 1010132

Strand: Direct

Name: nudC [H]

Synonym: Saro_0962

Alternate gene names: 87198984

Gene position: 1009251-1010132 (Clockwise)

Preceding gene: 87198983

Following gene: 87198985

Centisome position: 28.34

GC content: 68.82

Gene sequence:

>882_bases
ATGGAAACGACGATTGCATTCGCAGGCGCAGGGCTCGACCGCGCCGACCACGTCCGCGCCGATGCCGGGAAGCTCGGCGA
GCTGATGAACTGGCGCGCCCGCTTGCTGAAGCTGGAAGGCATCGATCCGGTCATTTCGCCCGAGGGCGGGCTGGACTGGG
GAACGCTGGCCGATGCCGATCCCGAGGCGGAGCTGGTGTTCCTGGGCCTGATGGAAGATGGCCGGGCCTGCTTTGCGCAA
GTCGCGCCGTCGCTCATCGGCAGCGTCGCTCCGCCCAATCCGCGCCTGTGGGCGGCGATGGGCATGCTGTCGCCGCAGGA
TCTTGCGATCTATGGCGGGGCGCGCAGTCTGGTCGACTGGCACGCGCGGCACCGCTTCTGCGCGCGCTGCGGCTCTGCCA
CGAAGCTAGCCAAGGGCGGCTGGCAGCGGTCCTGCACCAACGAGGCCTGCGAGGCCGAGCACTTCCCGCGCGTCGATCCG
GTCACGATCATGACCGTGGAGTGCGAGGGCGACCTGCTGCTGGGCCGGCAGCCGCGCTTTCCGCCCCGGCGCTATTCGGC
GCTGGCCGGGTTCGTGGAGCCGGGCGAGTCTCTCGAAGGCGCGGTCAAGCGCGAGGTGCTGGAGGAGGCGGGCGTGAAGG
CGCGATCGGTGCGCTATGTCGCCAGCCAGCCCTGGCCGTTCCCGTCCTCGCTGATGATCGGCTGCCATGCCTATGCCGAT
AGCCGCGAGATCACTATCGACACGACCGAACTGGACGACGCGCGATGGTTCACGCGCGAGGAAGTGCGCTATGCCATGAC
CGGGGCGGAAGACGGCGCGTTCATCGCCCCGCCGCCCTTCGCGGTGGCGCATCACCTGCTCAAGTGGTGGCTCGAACAAT
GA

Upstream 100 bases:

>100_bases
GCGTCTATACCCAGTACATGCCGTCGGACGCCTATCCGGTGCACCAGGAATTCGCAAAGGCCGTGCTGGCCGATGTAACG
GGAAGGAAGGCCGCGGCCTG

Downstream 100 bases:

>100_bases
GCGCGCCCGCGAGGGTGGCGCTCGACCTGTGGTCCGACGTGATGTGCCCGTGGTGCGTGATCGGACTGGCGCAGATCGAC
AAGGCGCTGGCGCTGCTGGG

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
METTIAFAGAGLDRADHVRADAGKLGELMNWRARLLKLEGIDPVISPEGGLDWGTLADADPEAELVFLGLMEDGRACFAQ
VAPSLIGSVAPPNPRLWAAMGMLSPQDLAIYGGARSLVDWHARHRFCARCGSATKLAKGGWQRSCTNEACEAEHFPRVDP
VTIMTVECEGDLLLGRQPRFPPRRYSALAGFVEPGESLEGAVKREVLEEAGVKARSVRYVASQPWPFPSSLMIGCHAYAD
SREITIDTTELDDARWFTREEVRYAMTGAEDGAFIAPPPFAVAHHLLKWWLEQ

Sequences:

>Translated_293_residues
METTIAFAGAGLDRADHVRADAGKLGELMNWRARLLKLEGIDPVISPEGGLDWGTLADADPEAELVFLGLMEDGRACFAQ
VAPSLIGSVAPPNPRLWAAMGMLSPQDLAIYGGARSLVDWHARHRFCARCGSATKLAKGGWQRSCTNEACEAEHFPRVDP
VTIMTVECEGDLLLGRQPRFPPRRYSALAGFVEPGESLEGAVKREVLEEAGVKARSVRYVASQPWPFPSSLMIGCHAYAD
SREITIDTTELDDARWFTREEVRYAMTGAEDGAFIAPPPFAVAHHLLKWWLEQ
>Mature_293_residues
METTIAFAGAGLDRADHVRADAGKLGELMNWRARLLKLEGIDPVISPEGGLDWGTLADADPEAELVFLGLMEDGRACFAQ
VAPSLIGSVAPPNPRLWAAMGMLSPQDLAIYGGARSLVDWHARHRFCARCGSATKLAKGGWQRSCTNEACEAEHFPRVDP
VTIMTVECEGDLLLGRQPRFPPRRYSALAGFVEPGESLEGAVKREVLEEAGVKARSVRYVASQPWPFPSSLMIGCHAYAD
SREITIDTTELDDARWFTREEVRYAMTGAEDGAFIAPPPFAVAHHLLKWWLEQ

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=279, Percent_Identity=43.010752688172, Blast_Score=211, Evalue=6e-55,
Organism=Homo sapiens, GI50593112, Length=209, Percent_Identity=40.1913875598086, Blast_Score=149, Evalue=4e-36,
Organism=Escherichia coli, GI48994995, Length=177, Percent_Identity=37.8531073446328, Blast_Score=125, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI212645999, Length=215, Percent_Identity=29.7674418604651, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71986510, Length=215, Percent_Identity=29.7674418604651, Blast_Score=96, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6321371, Length=184, Percent_Identity=33.695652173913, Blast_Score=104, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 32132; Mature: 32132

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METTIAFAGAGLDRADHVRADAGKLGELMNWRARLLKLEGIDPVISPEGGLDWGTLADAD
CCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCC
PEAELVFLGLMEDGRACFAQVAPSLIGSVAPPNPRLWAAMGMLSPQDLAIYGGARSLVDW
CCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCEEEECCHHHHHHH
HARHRFCARCGSATKLAKGGWQRSCTNEACEAEHFPRVDPVTIMTVECEGDLLLGRQPRF
HHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEECCCEEECCCCCC
PPRRYSALAGFVEPGESLEGAVKREVLEEAGVKARSVRYVASQPWPFPSSLMIGCHAYAD
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHEEEEECCCCCCCCCHHEEEEEEECC
SREITIDTTELDDARWFTREEVRYAMTGAEDGAFIAPPPFAVAHHLLKWWLEQ
CCEEEEECCCCCCCHHHHHHHHHHEECCCCCCCEECCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
METTIAFAGAGLDRADHVRADAGKLGELMNWRARLLKLEGIDPVISPEGGLDWGTLADAD
CCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCC
PEAELVFLGLMEDGRACFAQVAPSLIGSVAPPNPRLWAAMGMLSPQDLAIYGGARSLVDW
CCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCEEEECCHHHHHHH
HARHRFCARCGSATKLAKGGWQRSCTNEACEAEHFPRVDPVTIMTVECEGDLLLGRQPRF
HHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEECCCEEECCCCCC
PPRRYSALAGFVEPGESLEGAVKREVLEEAGVKARSVRYVASQPWPFPSSLMIGCHAYAD
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHEEEEECCCCCCCCCHHEEEEEEECC
SREITIDTTELDDARWFTREEVRYAMTGAEDGAFIAPPPFAVAHHLLKWWLEQ
CCEEEEECCCCCCCHHHHHHHHHHEECCCCCCCEECCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]