| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is fadB1 [H]
Identifier: 87198882
GI number: 87198882
Start: 910697
End: 911482
Strand: Direct
Name: fadB1 [H]
Synonym: Saro_0860
Alternate gene names: 87198882
Gene position: 910697-911482 (Clockwise)
Preceding gene: 87198881
Following gene: 87198883
Centisome position: 25.57
GC content: 65.01
Gene sequence:
>786_bases ATGGCCGAGTACGAAACCATCCTCGTCGAACAGAAGGGTGCTGTCACCCTCATCACTCTGAACCGCCCGCAGGCGCTCAA CGCGCTCAATTCGCAGGTGCTGGCCGAGCTGATCGAAGCCTTCGCCGCCTACGAGGCCGACGCCTCGCAGCGCTGCGCCG TGCTGACCGGATCGGGCGAGAAGGCTTTTGCCGCCGGGGCCGACATCAAGGAAATGTCGGAAAAGCCCGCCGCCGACTTC TATAACGAGGACTTCTTCTCGAAGTGGACCAGCCACCTCGTGAAGACCACCCGCAAGCCCTGGATCGCTGCCGTGAACGG CTTTGCTCTGGGCGGCGGCTGCGAGCTTGCCATGATGGCGGACTTCATCATCGCTTCCGAGAACGCGAAGTTCGGCCAGC CCGAGATCAAGCTTGGCGTTGCCCCCGGCATGGGCGGCTCGCAGCGCCTGACCCGCGCGGTGGGCAAGGCCAAGGCGATG GACATGTGCCTGACCGGCCGGATGATGGACGCCGCCGAAGCCGAGCGTTCGGGCCTCGTTACCCGCGTCGTGCCGCTGGC CGATCTGCTGGCCGATGCGCTCAAGACCGCCGAGACCATCGCCGCGATGCCGCCGATGGCGGCTGTCGCCAACAAGGAAA TGGTCAACGCCGCGTTCGAGACCACGCTAGACCAGGGCCTGCTGTTCGAACGCCGCGTGTTCCAGATCCTCACCGCCAGC GAGGACAAGGCCGAAGGCATGAAGGCCTTCATCGAAAAGCGCCCCGGCGTGTGGAAGGGACGTTAA
Upstream 100 bases:
>100_bases CTGAACTCGTTTCAGCATCCATCGTGCCCCACGCGCGATGCTCCGAATTGAAACATGGACCCTGAAACAAGTTCAGGGTG ACGAATTGCAGGAGGCATCA
Downstream 100 bases:
>100_bases GCCCATGAAAATCGCATTCATCGGCCTCGGCAACATGGGCGGCGGCATGGCCGCGAACCTCGTCAAGGCAGGCCACGACG TCCACGCCTTCGACCTTGCC
Product: short chain enoyl-CoA hydratase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MAEYETILVEQKGAVTLITLNRPQALNALNSQVLAELIEAFAAYEADASQRCAVLTGSGEKAFAAGADIKEMSEKPAADF YNEDFFSKWTSHLVKTTRKPWIAAVNGFALGGGCELAMMADFIIASENAKFGQPEIKLGVAPGMGGSQRLTRAVGKAKAM DMCLTGRMMDAAEAERSGLVTRVVPLADLLADALKTAETIAAMPPMAAVANKEMVNAAFETTLDQGLLFERRVFQILTAS EDKAEGMKAFIEKRPGVWKGR
Sequences:
>Translated_261_residues MAEYETILVEQKGAVTLITLNRPQALNALNSQVLAELIEAFAAYEADASQRCAVLTGSGEKAFAAGADIKEMSEKPAADF YNEDFFSKWTSHLVKTTRKPWIAAVNGFALGGGCELAMMADFIIASENAKFGQPEIKLGVAPGMGGSQRLTRAVGKAKAM DMCLTGRMMDAAEAERSGLVTRVVPLADLLADALKTAETIAAMPPMAAVANKEMVNAAFETTLDQGLLFERRVFQILTAS EDKAEGMKAFIEKRPGVWKGR >Mature_260_residues AEYETILVEQKGAVTLITLNRPQALNALNSQVLAELIEAFAAYEADASQRCAVLTGSGEKAFAAGADIKEMSEKPAADFY NEDFFSKWTSHLVKTTRKPWIAAVNGFALGGGCELAMMADFIIASENAKFGQPEIKLGVAPGMGGSQRLTRAVGKAKAMD MCLTGRMMDAAEAERSGLVTRVVPLADLLADALKTAETIAAMPPMAAVANKEMVNAAFETTLDQGLLFERRVFQILTASE DKAEGMKAFIEKRPGVWKGR
Specific function: Could possibly oxidize fatty acids using specific components [H]
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=261, Percent_Identity=49.4252873563218, Blast_Score=238, Evalue=3e-63, Organism=Homo sapiens, GI37594469, Length=212, Percent_Identity=33.4905660377358, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI37594471, Length=212, Percent_Identity=33.4905660377358, Blast_Score=112, Evalue=5e-25, Organism=Homo sapiens, GI31542718, Length=246, Percent_Identity=29.2682926829268, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI70995211, Length=223, Percent_Identity=32.2869955156951, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI20127408, Length=225, Percent_Identity=33.7777777777778, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI4502327, Length=259, Percent_Identity=32.046332046332, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI68989263, Length=239, Percent_Identity=29.2887029288703, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI45643119, Length=217, Percent_Identity=29.9539170506912, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI260275230, Length=217, Percent_Identity=29.9539170506912, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI260274832, Length=217, Percent_Identity=29.9539170506912, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI25453481, Length=259, Percent_Identity=26.2548262548263, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI51538573, Length=259, Percent_Identity=26.2548262548263, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI4757966, Length=252, Percent_Identity=26.5873015873016, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI51538581, Length=252, Percent_Identity=26.5873015873016, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI4757968, Length=257, Percent_Identity=25.6809338521401, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI49355787, Length=257, Percent_Identity=25.6809338521401, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI221136756, Length=256, Percent_Identity=25.78125, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI221136753, Length=256, Percent_Identity=25.78125, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI221307494, Length=256, Percent_Identity=25.78125, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI62530384, Length=229, Percent_Identity=27.0742358078603, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI157694516, Length=233, Percent_Identity=25.7510729613734, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI213417737, Length=233, Percent_Identity=25.7510729613734, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI261878539, Length=128, Percent_Identity=29.6875, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI1787659, Length=255, Percent_Identity=44.3137254901961, Blast_Score=207, Evalue=7e-55, Organism=Escherichia coli, GI221142681, Length=263, Percent_Identity=40.3041825095057, Blast_Score=171, Evalue=5e-44, Organism=Escherichia coli, GI1788597, Length=264, Percent_Identity=34.0909090909091, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI1787660, Length=262, Percent_Identity=35.8778625954198, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI87082183, Length=261, Percent_Identity=29.5019157088123, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1790281, Length=174, Percent_Identity=34.4827586206897, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1788682, Length=193, Percent_Identity=30.5699481865285, Blast_Score=86, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17554946, Length=253, Percent_Identity=50.197628458498, Blast_Score=241, Evalue=3e-64, Organism=Caenorhabditis elegans, GI25145438, Length=246, Percent_Identity=50.4065040650407, Blast_Score=235, Evalue=2e-62, Organism=Caenorhabditis elegans, GI17560910, Length=256, Percent_Identity=33.984375, Blast_Score=137, Evalue=7e-33, Organism=Caenorhabditis elegans, GI17540714, Length=225, Percent_Identity=34.6666666666667, Blast_Score=125, Evalue=2e-29, Organism=Caenorhabditis elegans, GI25144160, Length=191, Percent_Identity=35.0785340314136, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI25144157, Length=191, Percent_Identity=35.0785340314136, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17558304, Length=233, Percent_Identity=30.9012875536481, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17540306, Length=249, Percent_Identity=31.3253012048193, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI25144276, Length=233, Percent_Identity=30.0429184549356, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17508953, Length=236, Percent_Identity=30.0847457627119, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17508951, Length=233, Percent_Identity=30.0429184549356, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17549921, Length=209, Percent_Identity=31.1004784688995, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17535521, Length=227, Percent_Identity=29.0748898678414, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17534483, Length=228, Percent_Identity=27.6315789473684, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17536985, Length=236, Percent_Identity=28.8135593220339, Blast_Score=87, Evalue=7e-18, Organism=Saccharomyces cerevisiae, GI6320241, Length=204, Percent_Identity=28.921568627451, Blast_Score=88, Evalue=2e-18, Organism=Drosophila melanogaster, GI20129971, Length=241, Percent_Identity=55.1867219917012, Blast_Score=252, Evalue=2e-67, Organism=Drosophila melanogaster, GI24653477, Length=241, Percent_Identity=55.1867219917012, Blast_Score=252, Evalue=2e-67, Organism=Drosophila melanogaster, GI21357171, Length=250, Percent_Identity=34, Blast_Score=129, Evalue=3e-30, Organism=Drosophila melanogaster, GI24653139, Length=265, Percent_Identity=32.4528301886792, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI24650670, Length=260, Percent_Identity=31.9230769230769, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI19920382, Length=265, Percent_Identity=33.5849056603774, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI19922422, Length=275, Percent_Identity=29.4545454545455, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI28571729, Length=181, Percent_Identity=30.3867403314917, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI28571730, Length=181, Percent_Identity=30.3867403314917, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24654903, Length=218, Percent_Identity=25.6880733944954, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24583077, Length=191, Percent_Identity=33.5078534031414, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24583079, Length=191, Percent_Identity=33.5078534031414, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI19921000, Length=191, Percent_Identity=33.5078534031414, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24583165, Length=179, Percent_Identity=29.608938547486, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.17 [H]
Molecular weight: Translated: 28018; Mature: 27886
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS00166 ENOYL_COA_HYDRATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEYETILVEQKGAVTLITLNRPQALNALNSQVLAELIEAFAAYEADASQRCAVLTGSGE CCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC KAFAAGADIKEMSEKPAADFYNEDFFSKWTSHLVKTTRKPWIAAVNGFALGGGCELAMMA CEEECCCCHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHH DFIIASENAKFGQPEIKLGVAPGMGGSQRLTRAVGKAKAMDMCLTGRMMDAAEAERSGLV HHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCH TRVVPLADLLADALKTAETIAAMPPMAAVANKEMVNAAFETTLDQGLLFERRVFQILTAS HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EDKAEGMKAFIEKRPGVWKGR CHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure AEYETILVEQKGAVTLITLNRPQALNALNSQVLAELIEAFAAYEADASQRCAVLTGSGE CCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC KAFAAGADIKEMSEKPAADFYNEDFFSKWTSHLVKTTRKPWIAAVNGFALGGGCELAMMA CEEECCCCHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHH DFIIASENAKFGQPEIKLGVAPGMGGSQRLTRAVGKAKAMDMCLTGRMMDAAEAERSGLV HHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCH TRVVPLADLLADALKTAETIAAMPPMAAVANKEMVNAAFETTLDQGLLFERRVFQILTAS HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EDKAEGMKAFIEKRPGVWKGR CHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7751302; 11481430 [H]