Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is yjjL [C]
Identifier: 87198817
GI number: 87198817
Start: 844342
End: 845796
Strand: Direct
Name: yjjL [C]
Synonym: Saro_0795
Alternate gene names: 87198817
Gene position: 844342-845796 (Clockwise)
Preceding gene: 87198814
Following gene: 87198818
Centisome position: 23.71
GC content: 67.22
Gene sequence:
>1455_bases ATGGCAGGTGTGGTGGTTGCCGCGGGGCCCGATGCCGAAAGCGTCGCCAGAGGCGTGGCCAGAGATGTGGCCAGAGACGG GGAAAGTGCGGGCGGCCCGGTCGGGGCGGAGCGTCAGTGGCCATCGAGCCGGGCGGCCTACTGGGCGCTGTTCGTCATCA TCCTCGCCACCTTCCTCAACTTCTTCGACCAGACCGTCTTCGGGATGCTGGCGCAACGCATCAAGGTCGATTTCGGCCTG ACCGACGAGCAGCTCGGCTTTCTCGGCGGGCCGGCAACGGTCATCTTCTTCGTCTTCGCCGGCATTCCGCTCGCGCGGCT GGCCGACATCTACCCGCGCAAGCTGGTGCTGGCGGGCGGCATGGCCGCGACCGGCCTCGTCATGGGCCTTGGCGGTCTTG CGCAGGGCTTCGGTCAGTTCGTCGGCAGCCGCATGTTCCTTGGCGCGGGCGGATCGGCCCATGCCCCGGCGGCCTATTCG ATGATCGCGGACTATTTTCCGCCGAAGAAGATCACTCGCGCCTTTTCGCTTCTCCAGCTCGGCTTCATCGGCGGGTCGAC CGTCGGCGTTCTGGTGGGCGGCAAGCTGATCGTGGCGCTTGCGGGATGGGACGATCCGGTCGTGTTCGGGCTCCACCTCC ACAACTGGCAACTCATCCTTCTTGGGCAGGCGGTCCTCGGCCTTTGCGCCGCGCTTCTGCTGCTCACCGTCAAGGAGCCG CCGCGCCTGCTCGTGCCCGCCAGTGCCACGATTTCCGCTCCCCCCGCGCAAAGCCTCGGCCAGCGCATCCTGGCATTCAC CGGCCTCGACGCCGCGCGGGCGATCCATGCGCGGGGGCGGGTCTACTATCCGCTGTTCATCGGTCTCGCCCTTTCCGCGA TCGAGACGTTTGGCCTCGCCTTCTGGCGCGTGCCCTTCATGATCCGCACATACGGCTGGGACGAGGCACAGATCGGCATG GTCATGGCGCCGATGCTGCTGGTCTCGCAGCTTGTCGGCGTGTTTTTCGGCGGCTTCTTCGTCGAATGGCTGGCGCGGCG CTATTCCGACGCCAACGTGCGCGCTGCCACGATCCTCTTCGCCCTCGTCACCGTCTGCGCCATCACGTCTCCGATGATGC CGACCGGCGAGGCAAGCCTTGCCGTCATGGCGCTGGGCGGCATGTTCGGGCTGGCGGGCGCTGTCCCGCAGAACGCGGCG ATCCAGCGCATCGCGCCGAACGAGATGCGCGGGCAGGTGACGGCGATCTACCTGTTCATGTTCACCTTTTTCGGCGCGCT CGGCAGCTTTGTCGTCGGCACGGTGGCGCAGCGCGTGGTCGGCGTGGAGGCCGACCTGTGGAAGGCGCTGGTCATCACCG CGGGCGTGCTTCTGCCCATCGCGACGTTCGCCATGTTCATGGGCATCCGTCCTTACCGCGAGGAAGTTGCCCGGCTCGAG GCCGAGGGGCGGTAG
Upstream 100 bases:
>100_bases CTTTTGTATTCACCAGCGAGGAATTGTATGCAAGACTAACAATATTGCTGCTTCGACAAGGCCCGCCGAAATGGGTCGCC GCAGCGGGAGAGGAGAATTC
Downstream 100 bases:
>100_bases TTCTTTGCGCGAAGCCGGAAATGGGGCGTTGACAGCCACGTCCGGCTCGCGCAATTTGTTAGTAAGACAAACTAAATTGA TGGGAGTTGGACGTGTCCGA
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Family Transporter; Facilitator Superfamily Protein; Transporter Facilitator Family; Permease Of Facilitator Superfamily; Facilitator Superfamily Transporter; MFS Transporter; General Substrate Transporter Facilitator Superfamily; MFS Permease; Facilitator Superfamily Transporter Permease; General Substrate Transporter; Facilitator Superfamily Transporter Phthalate Permease; Sugar Transporter Family Protein; MFS Family Transporter; Facilitator Superfamily Permease
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MAGVVVAAGPDAESVARGVARDVARDGESAGGPVGAERQWPSSRAAYWALFVIILATFLNFFDQTVFGMLAQRIKVDFGL TDEQLGFLGGPATVIFFVFAGIPLARLADIYPRKLVLAGGMAATGLVMGLGGLAQGFGQFVGSRMFLGAGGSAHAPAAYS MIADYFPPKKITRAFSLLQLGFIGGSTVGVLVGGKLIVALAGWDDPVVFGLHLHNWQLILLGQAVLGLCAALLLLTVKEP PRLLVPASATISAPPAQSLGQRILAFTGLDAARAIHARGRVYYPLFIGLALSAIETFGLAFWRVPFMIRTYGWDEAQIGM VMAPMLLVSQLVGVFFGGFFVEWLARRYSDANVRAATILFALVTVCAITSPMMPTGEASLAVMALGGMFGLAGAVPQNAA IQRIAPNEMRGQVTAIYLFMFTFFGALGSFVVGTVAQRVVGVEADLWKALVITAGVLLPIATFAMFMGIRPYREEVARLE AEGR
Sequences:
>Translated_484_residues MAGVVVAAGPDAESVARGVARDVARDGESAGGPVGAERQWPSSRAAYWALFVIILATFLNFFDQTVFGMLAQRIKVDFGL TDEQLGFLGGPATVIFFVFAGIPLARLADIYPRKLVLAGGMAATGLVMGLGGLAQGFGQFVGSRMFLGAGGSAHAPAAYS MIADYFPPKKITRAFSLLQLGFIGGSTVGVLVGGKLIVALAGWDDPVVFGLHLHNWQLILLGQAVLGLCAALLLLTVKEP PRLLVPASATISAPPAQSLGQRILAFTGLDAARAIHARGRVYYPLFIGLALSAIETFGLAFWRVPFMIRTYGWDEAQIGM VMAPMLLVSQLVGVFFGGFFVEWLARRYSDANVRAATILFALVTVCAITSPMMPTGEASLAVMALGGMFGLAGAVPQNAA IQRIAPNEMRGQVTAIYLFMFTFFGALGSFVVGTVAQRVVGVEADLWKALVITAGVLLPIATFAMFMGIRPYREEVARLE AEGR >Mature_483_residues AGVVVAAGPDAESVARGVARDVARDGESAGGPVGAERQWPSSRAAYWALFVIILATFLNFFDQTVFGMLAQRIKVDFGLT DEQLGFLGGPATVIFFVFAGIPLARLADIYPRKLVLAGGMAATGLVMGLGGLAQGFGQFVGSRMFLGAGGSAHAPAAYSM IADYFPPKKITRAFSLLQLGFIGGSTVGVLVGGKLIVALAGWDDPVVFGLHLHNWQLILLGQAVLGLCAALLLLTVKEPP RLLVPASATISAPPAQSLGQRILAFTGLDAARAIHARGRVYYPLFIGLALSAIETFGLAFWRVPFMIRTYGWDEAQIGMV MAPMLLVSQLVGVFFGGFFVEWLARRYSDANVRAATILFALVTVCAITSPMMPTGEASLAVMALGGMFGLAGAVPQNAAI QRIAPNEMRGQVTAIYLFMFTFFGALGSFVVGTVAQRVVGVEADLWKALVITAGVLLPIATFAMFMGIRPYREEVARLEA EGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI17864456, Length=327, Percent_Identity=23.5474006116208, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI24654039, Length=327, Percent_Identity=23.5474006116208, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI24654041, Length=327, Percent_Identity=23.2415902140673, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI24654037, Length=327, Percent_Identity=23.2415902140673, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24654044, Length=201, Percent_Identity=25.8706467661692, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51219; Mature: 51088
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGVVVAAGPDAESVARGVARDVARDGESAGGPVGAERQWPSSRAAYWALFVIILATFLN CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH FFDQTVFGMLAQRIKVDFGLTDEQLGFLGGPATVIFFVFAGIPLARLADIYPRKLVLAGG HHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCHHEEECC MAATGLVMGLGGLAQGFGQFVGSRMFLGAGGSAHAPAAYSMIADYFPPKKITRAFSLLQL HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH GFIGGSTVGVLVGGKLIVALAGWDDPVVFGLHLHNWQLILLGQAVLGLCAALLLLTVKEP HCCCCCHHHEEECCEEEEEEECCCCCEEEEEEECCEEEEHHHHHHHHHHHHHHHHHCCCC PRLLVPASATISAPPAQSLGQRILAFTGLDAARAIHARGRVYYPLFIGLALSAIETFGLA CCEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHH FWRVPFMIRTYGWDEAQIGMVMAPMLLVSQLVGVFFGGFFVEWLARRYSDANVRAATILF HHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH ALVTVCAITSPMMPTGEASLAVMALGGMFGLAGAVPQNAAIQRIAPNEMRGQVTAIYLFM HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHH FTFFGALGSFVVGTVAQRVVGVEADLWKALVITAGVLLPIATFAMFMGIRPYREEVARLE HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AEGR CCCC >Mature Secondary Structure AGVVVAAGPDAESVARGVARDVARDGESAGGPVGAERQWPSSRAAYWALFVIILATFLN CCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH FFDQTVFGMLAQRIKVDFGLTDEQLGFLGGPATVIFFVFAGIPLARLADIYPRKLVLAGG HHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCHHEEECC MAATGLVMGLGGLAQGFGQFVGSRMFLGAGGSAHAPAAYSMIADYFPPKKITRAFSLLQL HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH GFIGGSTVGVLVGGKLIVALAGWDDPVVFGLHLHNWQLILLGQAVLGLCAALLLLTVKEP HCCCCCHHHEEECCEEEEEEECCCCCEEEEEEECCEEEEHHHHHHHHHHHHHHHHHCCCC PRLLVPASATISAPPAQSLGQRILAFTGLDAARAIHARGRVYYPLFIGLALSAIETFGLA CCEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHH FWRVPFMIRTYGWDEAQIGMVMAPMLLVSQLVGVFFGGFFVEWLARRYSDANVRAATILF HHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH ALVTVCAITSPMMPTGEASLAVMALGGMFGLAGAVPQNAAIQRIAPNEMRGQVTAIYLFM HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHH FTFFGALGSFVVGTVAQRVVGVEADLWKALVITAGVLLPIATFAMFMGIRPYREEVARLE HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AEGR CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA